RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 EXD3Q8N9H8 876 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 OR52I1Q8NGK6 324 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 FNDC9Q8TBE3 224 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 RNF128Q8TEB7 428 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 ABHD3Q8WU67 409 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 DDOQ99489 341 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 TUBA1CQ9BQE3 449 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 NUAK2Q9H093 628 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 PLSCR2Q9NRY7 297 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 MRPS18AQ9NVS2 196 aaKnown RBP15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 RCE1Q9Y256 329 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 EXOSC1Q9Y3B2 195 aaKnown RBP15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 ZNF175Q9Y473 711 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 FLVCR1Q9Y5Y0 555 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC43A1O75387 559 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 KHDRBS3O75525 346 aaKnown RBP15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 ACTC1P68032 377 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 ACTA1P68133 377 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 RUNX1T1Q06455 604 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 THEM4Q5T1C6 240 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 SHFQ7M4L6 423 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 AAED1Q7RTV5 226 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 TSSK2Q96PF2 358 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 ZNF385AQ96PM9 386 aaKnown RBP15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 FGF20Q9NP95 211 aaPredicted RBP15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 B3GAT2Q9NPZ5 323 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 HAO2Q9NYQ3 351 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 DIMT1Q9UNQ2 313 aaKnown RBP15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 ERGIC3Q9Y282 383 aa15.24■□□□□ 0.03
CCDC28B-202ENST00000421922 ZNF716A6NP11 495 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 FAM171A2A8MVW0 826 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 HTR1AP08908 422 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 PGA4P0DJD7 388 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 PGA3P0DJD8 388 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 C21orf33P30042 268 aaPredicted RBP15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 RPL5P46777 297 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 GLO1Q04760 184 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 KLRB1Q12918 225 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 B3GLCTQ6Y288 498 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 OR6V1Q8N148 313 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 CISD2Q8N5K1 135 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 OR10H4Q8NGA5 316 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 OR4F15Q8NGB8 312 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 OR5M9Q8NGP3 310 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 FCGR1BQ92637 280 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 RORBQ92753 470 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 KISS1RQ969F8 398 aaPredicted RBP15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 INTS12Q96CB8 462 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 MRPL48Q96GC5 212 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 OR2M2Q96R28 347 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 TRIB1Q96RU8 372 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 MYCBPQ99417 103 aaPredicted RBP15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 MND1Q9BWT6 205 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 RACGAP1Q9H0H5 632 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 B9D1Q9UPM9 204 aa15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 EXOGQ9Y2C4 368 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 NOSIPQ9Y314 301 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 FLNBO75369 2602 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-202ENST00000421922 SBK2P0C263 348 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 CTLA4P16410 223 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 PTGS2P35354 604 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 NAA10P41227 235 aaPredicted RBP15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 GUCA1AP43080 201 aaPredicted RBP15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 FMODQ06828 376 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 GGTLC2Q14390 218 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 TBCEQ15813 527 aaPredicted RBP15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 ERI1Q8IV48 349 aaKnown RBP15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 GPR137CQ8N3F9 429 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 ZNF775Q96BV0 537 aaPredicted RBP15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC25A18Q9H1K4 315 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 BATF3Q9NR55 127 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 INPP5EQ9NRR6 644 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 PARPBPQ9NWS1 579 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 MGAQ8IWI9 3026 aa15.22■□□□□ 0.03
CCDC28B-202ENST00000421922 SVILO95425 2214 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 IGKV3D-15A0A087WSY6 115 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 DAPL1A0PJW8 107 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 TRIM64CA6NLI5 447 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 AHRRA9YTQ3 701 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 MRPL33O75394 65 aaKnown RBP15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 KRT33AO76009 404 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 TPOP07202 933 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 ABOP16442 354 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 MAP2K4P45985 399 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 ZNF585AQ6P3V2 769 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 NHLRC1Q6VVB1 395 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 ZBTB46Q86UZ6 589 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC35F2Q8IXU6 374 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 ACBD7Q8N6N7 88 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 Q8NA96 180 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 OR10H5Q8NGA6 315 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 FAR1Q8WVX9 515 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 NSMAFQ92636 917 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 TMEM45BQ96B21 275 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 BBC3Q96PG8 261 aaPredicted RBP15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 INTS14Q96SY0 518 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 TBX5Q99593 518 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 CDCA4Q9BXL8 241 aa15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 MRPL13Q9BYD1 178 aaKnown RBP15.21■□□□□ 0.03
CCDC28B-202ENST00000421922 ULBP2Q9BZM5 246 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms