RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CCL21O00585 134 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 SLC16A7O60669 478 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 GYPBP06028 91 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 QDPRP09417 244 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 CRABP1P29762 137 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 CEACAM8P31997 349 aaPredicted RBP15.99■□□□□ 0.15
SDC1-203ENST00000403076 FMODQ06828 376 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 RIPPLY2Q5TAB7 128 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 MEDAGQ5VYS4 303 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 DNM1P34Q6PK57 102 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 C20orf196Q8IYI0 205 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 UBE2J2Q8N2K1 259 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 OR6K3Q8NGY3 331 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 OR2T4Q8NH00 348 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 PTP4A1Q93096 173 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 DDOQ99489 341 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 HCAR1Q9BXC0 346 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 ULBP2Q9BZM5 246 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 NUAK2Q9H093 628 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 MEMO1Q9Y316 297 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 DOCK7Q96N67 2140 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 OR6C65A6NJZ3 312 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 HSPB2A8KAH6 182 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 ENTPD6O75354 484 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 IGHV3-9P01782 118 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 STSP08842 583 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 SPI1P17947 270 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 GABRB1P18505 474 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 CTSSP25774 331 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 FMO3P31513 532 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 KIR2DL2P43627 348 aaPredicted RBP15.99■□□□□ 0.15
SDC1-203ENST00000403076 SLC25A1P53007 311 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 DBPQ10586 325 aaPredicted RBP15.99■□□□□ 0.15
SDC1-203ENST00000403076 CDK5R2Q13319 367 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 GUSBP1Q15486 140 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 HSPB2Q16082 182 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 OCLNQ16625 522 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 TSPO2Q5TGU0 170 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 NXNL2Q5VZ03 156 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 VWA1Q6PCB0 445 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 POMGNT2Q8NAT1 580 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 PROKR2Q8NFJ6 384 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 BBS1Q8NFJ9 593 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 NSMAFQ92636 917 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 TMEM54Q969K7 222 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 MCHR2Q969V1 340 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 ZNF582Q96NG8 517 aaPredicted RBP15.99■□□□□ 0.15
SDC1-203ENST00000403076 PROCRQ9UNN8 238 aa15.99■□□□□ 0.15
SDC1-203ENST00000403076 SPENQ96T58 3664 aaKnown RBP15.99■□□□□ 0.15
SDC1-203ENST00000403076 NBASA2RRP1 2371 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 SNTNA6NMZ2 147 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 KHDRBS3O75525 346 aaKnown RBP15.98■□□□□ 0.15
SDC1-203ENST00000403076 UPK3AO75631 287 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 CLUP10909 449 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 EDNRAP25101 427 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 PYCR1P32322 319 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 OR3A2P47893 321 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 CDH11P55287 796 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 APOFQ13790 326 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 SLC25A30Q5SVS4 291 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 AADACL4Q5VUY2 407 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 NCCRP1Q6ZVX7 275 aaPredicted RBP15.98■□□□□ 0.15
SDC1-203ENST00000403076 GID4Q8IVV7 300 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 OR6V1Q8N148 313 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 MARVELD2Q8N4S9 558 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 NAXEQ8NCW5 288 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 OR51L1Q8NGJ5 315 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 PRR7Q8TB68 274 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 APH1BQ8WW43 257 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 RND1Q92730 232 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 RFKQ969G6 155 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 SFXN3Q9BWM7 321 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 NMNAT2Q9BZQ4 307 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 FOXD3Q9UJU5 478 aaPredicted RBP15.98■□□□□ 0.15
SDC1-203ENST00000403076 B9D1Q9UPM9 204 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 LRCH1Q9Y2L9 728 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 FKBP7Q9Y680 259 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 ARHGAP21Q5T5U3 1957 aa15.98■□□□□ 0.15
SDC1-203ENST00000403076 POLEQ07864 2286 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 FAM171A2A8MVW0 826 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 PRODHO43272 600 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 WBP4O75554 376 aaKnown RBP15.97■□□□□ 0.15
SDC1-203ENST00000403076 SMNDC1O75940 238 aaKnown RBP eCLIP15.97■□□□□ 0.15
SDC1-203ENST00000403076 CTLA4P16410 223 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 GNLYP22749 145 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 HIST3H3Q16695 136 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 PHYHD1Q5SRE7 291 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 LRFN4Q6PJG9 635 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 MEPCEQ7L2J0 689 aaKnown RBP15.97■□□□□ 0.15
SDC1-203ENST00000403076 BTLAQ7Z6A9 289 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 FJX1Q86VR8 437 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 OR6K6Q8NGW6 343 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 ALKBH3Q96Q83 286 aaPredicted RBP15.97■□□□□ 0.15
SDC1-203ENST00000403076 DMRTA2Q96SC8 542 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 RBM24Q9BX46 236 aaKnown RBP15.97■□□□□ 0.15
SDC1-203ENST00000403076 LINC00470Q9BZP3 86 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 AMBNQ9NP70 447 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 SLC7A10Q9NS82 523 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 UBAP1Q9NZ09 502 aa15.97■□□□□ 0.15
SDC1-203ENST00000403076 PRSS50Q9UI38 385 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms