RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 LAP3P28838 519 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 NAA10P41227 235 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 AKR1C3P42330 323 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 IRF4Q15306 451 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 NR0B2Q15466 257 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 AMZ1Q400G9 498 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 FNDC3BQ53EP0 1204 aaKnown RBP13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 FAM76BQ5HYJ3 339 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 NKAIN2Q5VXU1 208 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 OR10K2Q6IF99 312 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 RPL13AP3Q6NVV1 102 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 LCTLQ6UWM7 567 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 RPS4Y2Q8TD47 263 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 TFGQ92734 400 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 TOLLIPQ9H0E2 274 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 SLITRK2Q9H156 845 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 TRPV4Q9HBA0 871 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 GLOD5A6NK44 160 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 NARSO43776 548 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 RPN2P04844 631 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 CD14P08571 375 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 CSRP1P21291 193 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 ZNF136P52737 540 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 NAAAQ02083 359 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 PON3Q15166 354 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 ZNF750Q32MQ0 723 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 ZNF658BQ4V348 819 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 ANKRD16Q6P6B7 361 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 DRAM2Q6UX65 266 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 SSX9Q7RTT3 188 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 SLC35F2Q8IXU6 374 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 POMGNT2Q8NAT1 580 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 TMEM239Q8WW34 195 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 NECAB3Q96P71 396 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 IL17FQ96PD4 163 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 TAAR9Q96RI9 348 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 OCSTAMPQ9BR26 566 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 ZDHHC5Q9C0B5 715 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 NKX2-4Q9H2Z4 354 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 WSB2Q9NYS7 404 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 CALML5Q9NZT1 146 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 ASH2LQ9UBL3 628 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 A0A0G2JN53 185 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 ZFPL1O95159 310 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 F3P13726 295 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 TIMP2P16035 220 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 NTSP30990 170 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 TSPAN7P41732 249 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 NANOS3P60323 173 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 DUSP2Q05923 314 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 TMEM115Q12893 351 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 AIMP2Q13155 320 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 AKIRIN2Q53H80 203 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 PRRT3Q5FWE3 981 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 ATPAF1Q5TC12 328 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 CACUL1Q86Y37 369 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 TRAM1L1Q8N609 369 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 OR56A1Q8NGH5 318 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 NUBPLQ8TB37 319 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 RAB7BQ96AH8 199 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 MRGPRX3Q96LB0 322 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 CNN2Q99439 309 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 SLC25A21Q9BQT8 299 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 SELENOIQ9C0D9 397 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 TSPAN10Q9H1Z9 355 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 TRIOBPQ9H2D6 2365 aa13.34□□□□□ -0.27
VPS9D1-201ENST00000389386 TRAV27A0A087WT01 109 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 A0A087WV48 116 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 A0A0A6YYC8 382 aaPredicted RBP13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 EPOPA6NHQ4 379 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 A6NLC8 198 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 I3L1I5 382 aaPredicted RBP13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 HLA-GP17693 338 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 PRKXP51817 358 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 PDX1P52945 283 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 ZNF77Q15935 545 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 TMPRSS11FQ6ZWK6 438 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 CCDC116Q8IYX3 515 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 GABRG1Q8N1C3 465 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 ARRDC1Q8N5I2 433 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 OR51L1Q8NGJ5 315 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 OR51A7Q8NH64 312 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 NUDCD2Q8WVJ2 157 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 HRH4Q9H3N8 390 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 SEMA6CQ9H3T2 930 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 IGFLR1Q9H665 355 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 CYTL1Q9NRR1 136 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 LPAR3Q9UBY5 353 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 ZNF443Q9Y2A4 671 aaPredicted RBP13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 NOP16Q9Y3C1 178 aaKnown RBP13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 BRWD1Q9NSI6 2320 aa13.33□□□□□ -0.27
VPS9D1-201ENST00000389386 TCF20Q9UGU0 1960 aaKnown RBP13.33□□□□□ -0.28
VPS9D1-201ENST00000389386 TEX13DA0A0J9YY54 714 aaPredicted RBP13.33□□□□□ -0.28
VPS9D1-201ENST00000389386 C9JQL5 133 aa13.33□□□□□ -0.28
VPS9D1-201ENST00000389386 PPM1DO15297 605 aa13.33□□□□□ -0.28
VPS9D1-201ENST00000389386 ERAL1O75616 437 aaKnown RBP13.33□□□□□ -0.28
VPS9D1-201ENST00000389386 PGAM2P15259 253 aa13.33□□□□□ -0.28
VPS9D1-201ENST00000389386 ACKR3P25106 362 aa13.33□□□□□ -0.28
VPS9D1-201ENST00000389386 ITGA3P26006 1051 aa13.33□□□□□ -0.28
VPS9D1-201ENST00000389386 EFNB2P52799 333 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms