RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 Q499Y3 187 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 SLC6A19Q695T7 634 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 LRRN1Q6UXK5 716 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 NUP54Q7Z3B4 507 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 APCDD1LQ8NCL9 501 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 DAZLQ92904 295 aaKnown RBP12.06□□□□□ -0.48
CCDC3-202ENST00000378839 PCED1AQ9H1Q7 454 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 KCNK15Q9H427 330 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 BEX1Q9HBH7 125 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 FLVCR2Q9UPI3 526 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 B9D1Q9UPM9 204 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 FOXJ3Q9UPW0 622 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 TMEM200CA6NKL6 621 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 HIST1H2ABP04908 130 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 CTLA4P16410 223 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 DCAF7P61962 342 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 TNK1Q13470 666 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 MELKQ14680 651 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 HLA-DQA1Q5Y7H0 255 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 BICRALQ6AI39 1079 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 HIST3H2AQ7L7L0 130 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 PIGKQ92643 395 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 HIST1H2ACQ93077 130 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 FBXO9Q9UK97 447 aaPredicted RBP12.06□□□□□ -0.48
CCDC3-202ENST00000378839 FREM2Q5SZK8 3169 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 CTDSPLO15194 276 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 EIF4E2O60573 245 aaKnown RBP12.06□□□□□ -0.48
CCDC3-202ENST00000378839 TRIM3O75382 744 aaPredicted RBP12.06□□□□□ -0.48
CCDC3-202ENST00000378839 AFF3P51826 1226 aaKnown RBP12.06□□□□□ -0.48
CCDC3-202ENST00000378839 PNLIPRP2P54317 469 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 RNF4P78317 190 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 ST3GAL2Q16842 350 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 WDR38Q5JTN6 314 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 FAM69BQ5VUD6 431 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 FAAP20Q6NZ36 180 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 TSSK4Q6SA08 328 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 PRSS42Q7Z5A4 293 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 SDR16C5Q8N3Y7 309 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 INTS14Q96SY0 518 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 CDX2Q99626 313 aaPredicted RBP12.06□□□□□ -0.48
CCDC3-202ENST00000378839 MRTO4Q9UKD2 239 aaKnown RBP12.06□□□□□ -0.48
CCDC3-202ENST00000378839 SLC22A13Q9Y226 551 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 TRBV5-7A0A0A0MS05 114 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 IGLV1-36A0A0B4J1U3 117 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 LY6G6EA0A0G2JKS1 128 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 PRSS37A4D1T9 235 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 SHISA8B8ZZ34 492 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 ZNF593O00488 134 aaPredicted RBP12.05□□□□□ -0.48
CCDC3-202ENST00000378839 FABP7O15540 132 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 DXOO77932 396 aaKnown RBP12.05□□□□□ -0.48
CCDC3-202ENST00000378839 MAS1P04201 325 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 GSG1Q2KHT4 349 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 COL28A1Q2UY09 1125 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 SFRP4Q6FHJ7 346 aaPredicted RBP12.05□□□□□ -0.48
CCDC3-202ENST00000378839 LCN10Q6JVE6 187 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 LINGO2Q7L985 606 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 SLC29A4Q7RTT9 530 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 BPHLQ86WA6 291 aaPredicted RBP12.05□□□□□ -0.48
CCDC3-202ENST00000378839 NFAM1Q8NET5 270 aaPredicted RBP12.05□□□□□ -0.48
CCDC3-202ENST00000378839 OTOSQ8NHW6 89 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 SYNPRQ8TBG9 265 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 STT3BQ8TCJ2 826 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 PHYHIPQ92561 330 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 KLHL15Q96M94 604 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 CACNG6Q9BXT2 260 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 DPAGT1Q9H3H5 408 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 ZNF768Q9H5H4 540 aaKnown RBP12.05□□□□□ -0.48
CCDC3-202ENST00000378839 U3KQA8 63 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 CACNA1CQ13936 2221 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 PLPP3O14495 311 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 ALX3O95076 343 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 GP1BBP13224 206 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 P2RX1P51575 399 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 CBFBQ13951 182 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 SGCBQ16585 318 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 C1orf140Q5VVS0 124 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 WDR74Q6RFH5 385 aaPredicted RBP12.05□□□□□ -0.48
CCDC3-202ENST00000378839 KCTD20Q7Z5Y7 419 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 GLB1L2Q8IW92 636 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 DND1Q8IYX4 353 aaKnown RBP12.05□□□□□ -0.48
CCDC3-202ENST00000378839 PLPP5Q8NEB5 264 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 OR11H4Q8NGC9 324 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 ZNF417Q8TAU3 575 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 C8orf44Q96CB5 159 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 ARL5BQ96KC2 179 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 ZNF587Q96SQ5 575 aaPredicted RBP12.05□□□□□ -0.48
CCDC3-202ENST00000378839 COPS7AQ9UBW8 275 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 RCE1Q9Y256 329 aa12.05□□□□□ -0.48
CCDC3-202ENST00000378839 FTCDNL1E5RQL4 147 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 DOK2O60496 412 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 SLC16A7O60669 478 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 RENP00797 406 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 HPXP02790 462 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 TACSTD2P09758 323 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 CDK2P24941 298 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 EFNB2P52799 333 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 RPL27P61353 136 aaKnown RBP12.04□□□□□ -0.48
CCDC3-202ENST00000378839 PITPNAQ00169 270 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 MFGE8Q08431 387 aaPredicted RBP12.04□□□□□ -0.48
CCDC3-202ENST00000378839 GPR139Q6DWJ6 353 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms