RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 OR52H1Q8NGJ2 320 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 TM4SF18Q96CE8 201 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 PDLIM7Q9NR12 457 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 TAS2R5Q9NYW4 299 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 PTTG3PQ9NZH4 202 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 V9GYS6 101 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 TRAV36DV7A0A075B6V5 113 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 IGHV3-15A0A0B4J1V0 119 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 UBE2G2P60604 165 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 DUSP2Q05923 314 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 DBPQ10586 325 aaPredicted RBP12.64□□□□□ -0.39
COL4A1-201ENST00000375820 TRNP1Q6NT89 227 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 TMEM182Q6ZP80 229 aaPredicted RBP12.64□□□□□ -0.39
COL4A1-201ENST00000375820 OR1S2Q8NGQ3 325 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 OR1E3Q8WZA6 343 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 LCORQ96JN0 433 aaPredicted RBP12.64□□□□□ -0.39
COL4A1-201ENST00000375820 SHARPINQ9H0F6 387 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 NGBQ9NPG2 151 aa12.64□□□□□ -0.39
COL4A1-201ENST00000375820 FAM221AA4D161 298 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 FITM1A5D6W6 292 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 NKX6-3A6NJ46 265 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 ZNF814B7Z6K7 855 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 THBS1P07996 1170 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 ELAVL4P26378 380 aaKnown RBP12.63□□□□□ -0.39
COL4A1-201ENST00000375820 FCER1GP30273 86 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 FCN2Q15485 313 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 STEAP1BQ6NZ63 245 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 OR8U1Q8NH10 309 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 GATA6Q92908 595 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 RNF167Q9H6Y7 350 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 AQP7P3A6NL99 342 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 DEGS1O15121 323 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 FURINP09958 794 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 RFC3P40938 356 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 GNB2P62879 340 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 FLI1Q01543 452 aaPredicted RBP12.63□□□□□ -0.39
COL4A1-201ENST00000375820 IAH1Q2TAA2 248 aaPredicted RBP12.63□□□□□ -0.39
COL4A1-201ENST00000375820 GDPD3Q7L5L3 318 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 NAT6Q93015 286 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 PINX1Q96BK5 328 aaKnown RBP12.63□□□□□ -0.39
COL4A1-201ENST00000375820 FGF21Q9NSA1 209 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 FAM53CQ9NYF3 392 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 ADRA1AP35348 466 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 TRIM23P36406 574 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 ALKBH1Q13686 389 aaKnown RBP12.63□□□□□ -0.39
COL4A1-201ENST00000375820 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.63□□□□□ -0.39
COL4A1-201ENST00000375820 ASTLQ6HA08 431 aaPredicted RBP12.63□□□□□ -0.39
COL4A1-201ENST00000375820 PIGQQ9BRB3 760 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 LHX6Q9UPM6 363 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 MAGEB4O15481 346 aaPredicted RBP12.63□□□□□ -0.39
COL4A1-201ENST00000375820 KCNK5O95279 499 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 TBCEQ15813 527 aaPredicted RBP12.63□□□□□ -0.39
COL4A1-201ENST00000375820 RNF170Q96K19 258 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 ATP13A2Q9NQ11 1180 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 TMEM202A6NGA9 273 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 DEFA6Q01524 100 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 RETREG3Q86VR2 466 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 C2CD4CQ8TF44 421 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 PDXPQ96GD0 296 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 SPACA5Q96QH8 159 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 OR52A1Q9UKL2 312 aa12.63□□□□□ -0.39
COL4A1-201ENST00000375820 LGI1O95970 557 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 HBG1P69891 147 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 HBG2P69892 147 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 EXOSC2Q13868 293 aaKnown RBP12.62□□□□□ -0.39
COL4A1-201ENST00000375820 ACKR1Q16570 336 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 ANGPTL5Q86XS5 388 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 COL14A1Q05707 1796 aaKnown RBP12.62□□□□□ -0.39
COL4A1-201ENST00000375820 A0A096LPE4 126 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 A0A1W2PPZ6 126 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 NME2P1O60361 137 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 SEMG1P04279 462 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 TBC1D28Q2M2D7 210 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 TIGD3Q6B0B8 471 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 FAM122CQ6P4D5 195 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 FAM109AQ8N4B1 249 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 C11orf54Q9H0W9 315 aaPredicted RBP12.62□□□□□ -0.39
COL4A1-201ENST00000375820 URB1O60287 2271 aaKnown RBP12.62□□□□□ -0.39
COL4A1-201ENST00000375820 CTRB1P17538 263 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 KIAA1024LP59773 190 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 CTRB2Q6GPI1 263 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 ANKRD16Q6P6B7 361 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 RBMS3Q6XE24 437 aaKnown RBP12.62□□□□□ -0.39
COL4A1-201ENST00000375820 RABEPKQ7Z6M1 372 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 SFT2D1Q8WV19 159 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 PKMYT1Q99640 499 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 QPCTLQ9NXS2 382 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 A0A0D9SG52 128 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 MNX1P50219 401 aaPredicted RBP12.62□□□□□ -0.39
COL4A1-201ENST00000375820 C17orf67Q0P5P2 114 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 CLEC12BQ2HXU8 276 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 PLK5Q496M5 336 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 RFPL4BQ6ZWI9 263 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 PGAP1Q75T13 922 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 GOT1L1Q8NHS2 421 aaPredicted RBP12.62□□□□□ -0.39
COL4A1-201ENST00000375820 FAM3DQ96BQ1 224 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 AMDHD1Q96NU7 426 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 FMN2Q9NZ56 1722 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 SEC14L6B5MCN3 397 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 TAPBPO15533 448 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms