RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TMEM38BQ9NVV0 291 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 EGFL7Q9UHF1 273 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 B9A039 149 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 NDUFAB1O14561 156 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 TRMUO75648 421 aaKnown RBP15.9■□□□□ 0.14
CLN3-202ENST00000355477 IGHG1P01857 330 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 ACADSP16219 412 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 GIPRP48546 466 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 PTDSS1P48651 473 aaKnown RBP15.9■□□□□ 0.14
CLN3-202ENST00000355477 EFNA4P52798 201 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 CLRN1P58418 232 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 GNGT1P63211 74 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 FHL1Q13642 323 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 TRAM2Q15035 370 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 ARMC4Q5T2S8 1044 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 FKBP9P1Q75LS8 142 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 NRMQ8IXM6 262 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 SLC22A24Q8N4F4 322 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 RNF148Q8N7C7 305 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 IL17RDQ8NFM7 739 aa15.9■□□□□ 0.14
CLN3-202ENST00000355477 NANOS1Q8WY41 292 aaKnown RBP15.9■□□□□ 0.14
CLN3-202ENST00000355477 A0A096LNT2 108 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 TMEM129A0AVI4 362 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 MCIDASD6RGH6 385 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 PDE5AO76074 875 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 F12P00748 615 aaPredicted RBP15.89■□□□□ 0.13
CLN3-202ENST00000355477 OR8G3PP0DMU2 310 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 ZNF35P13682 527 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 PCSK6P29122 969 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 IFNA8P32881 189 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 SNRPD2P62316 118 aaKnown RBP15.89■□□□□ 0.13
CLN3-202ENST00000355477 PRKCDQ05655 676 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 RAB39AQ14964 217 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 EFNB3Q15768 340 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 KRT80Q6KB66 452 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 TBPL2Q6SJ96 375 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 CLEC2AQ6UVW9 174 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 PIGWQ7Z7B1 504 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 ZNF584Q8IVC4 421 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 NOXO1Q8NFA2 376 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 SORCS2Q96PQ0 1159 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 PLK3Q9H4B4 646 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 ZNF442Q9H7R0 627 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 SPAG4Q9NPE6 437 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 ADA2Q9NZK5 511 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 HIF3AQ9Y2N7 669 aa15.89■□□□□ 0.13
CLN3-202ENST00000355477 A0A087WUU8 490 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 INAFM1C9JVW0 142 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 UBL3O95164 117 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 NPR2P20594 1047 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 NR4A1P22736 598 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 DAP3P51398 398 aaKnown RBP15.88■□□□□ 0.13
CLN3-202ENST00000355477 SNTB2Q13425 540 aaKnown RBP15.88■□□□□ 0.13
CLN3-202ENST00000355477 DAG1Q14118 895 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 MSMPQ1L6U9 139 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 KRTAP21-3Q3LHN1 58 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 ALG10Q5BKT4 473 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 GLYATQ6IB77 296 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 ANKS4BQ8N8V4 417 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 LRRC75AQ8NAA5 344 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 FAM156AQ8NDB6 213 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 OR4K5Q8NGD3 323 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 HDAC2Q92769 488 aaKnown RBP15.88■□□□□ 0.13
CLN3-202ENST00000355477 TNFRSF13CQ96RJ3 184 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 VRK1Q99986 396 aaPredicted RBP15.88■□□□□ 0.13
CLN3-202ENST00000355477 TXNIPQ9H3M7 391 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 DENND2DQ9H6A0 471 aaPredicted RBP15.88■□□□□ 0.13
CLN3-202ENST00000355477 ARL8BQ9NVJ2 186 aa15.88■□□□□ 0.13
CLN3-202ENST00000355477 TRAV27A0A087WT01 109 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 IGKV1D-43A0A0B4J1Z2 117 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 HTR3EA5X5Y0 456 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 NPIPB13A6NJU9 1138 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 CENPBD1B2RD01 187 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 NPIPB4C9JG80 1138 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 hCG_2039718K7EN88 272 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 SLC2A10O95528 541 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 RAB36O95755 333 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 SAGP10523 405 aaPredicted RBP15.87■□□□□ 0.13
CLN3-202ENST00000355477 ZNF133P52736 654 aaPredicted RBP15.87■□□□□ 0.13
CLN3-202ENST00000355477 DSCR9P59020 149 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 MBOAT2Q6ZWT7 520 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 IGFN1Q86VF2 1251 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 SVOPLQ8N434 492 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 FAM86B1Q8N7N1 296 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 OR51A7Q8NH64 312 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 ACOT11Q8WXI4 607 aaPredicted RBP15.87■□□□□ 0.13
CLN3-202ENST00000355477 NMD3Q96D46 503 aaKnown RBP15.87■□□□□ 0.13
CLN3-202ENST00000355477 DOK1Q99704 481 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 NMNAT1Q9HAN9 279 aaPredicted RBP15.87■□□□□ 0.13
CLN3-202ENST00000355477 DCAF13Q9NV06 445 aaKnown RBP15.87■□□□□ 0.13
CLN3-202ENST00000355477 ENPP4Q9Y6X5 453 aa15.87■□□□□ 0.13
CLN3-202ENST00000355477 ANK3Q12955 4377 aaKnown RBP15.87■□□□□ 0.13
CLN3-202ENST00000355477 EFCAB9A8MZ26 197 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 CDC42EP2O14613 210 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 GPRIN2O60269 458 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 SERPINA5P05154 406 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 IGFBP1P08833 259 aaPredicted RBP15.86■□□□□ 0.13
CLN3-202ENST00000355477 FMODQ06828 376 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 TOP3AQ13472 1001 aaPredicted RBP15.86■□□□□ 0.13
CLN3-202ENST00000355477 C10orf128Q5T292 105 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms