RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 GRB2P62993 217 aaKnown RBP13.6□□□□□ -0.23
COL17A1-201ENST00000353479 CXADRP78310 365 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 MEX3BQ6ZN04 569 aaKnown RBP13.6□□□□□ -0.23
COL17A1-201ENST00000353479 OR6V1Q8N148 313 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 OR11L1Q8NGX0 322 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 ARL6Q9H0F7 186 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 PIGBOS1A0A0B4J2F0 54 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 FGL1Q08830 312 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 ZNF687Q8N1G0 1237 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 OR4D9Q8NGE8 314 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 SARAFQ96BY9 339 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 MRGPRX4Q96LA9 322 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 TMEM59Q9BXS4 323 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 HINT3Q9NQE9 182 aaKnown RBP13.6□□□□□ -0.23
COL17A1-201ENST00000353479 TBCCD1Q9NVR7 557 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 MED29Q9NX70 200 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 COQ3Q9NZJ6 369 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 RAB40ALP0C0E4 278 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 FAM76BQ5HYJ3 339 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 RAB40AQ8WXH6 277 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 GALNT9Q9HCQ5 603 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 FAM60AQ9NP50 221 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 SLC22A11Q9NSA0 550 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 CEP290O15078 2479 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 HMX3A6NHT5 357 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 FOXF1Q12946 379 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 SLC46A3Q7Z3Q1 461 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 OR52N1Q8NH53 320 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 PIGTQ969N2 578 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 FZD7O75084 574 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 S100A9P06702 114 aaKnown RBP13.59□□□□□ -0.23
COL17A1-201ENST00000353479 MSR1P21757 451 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 CDK2P24941 298 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 AGERQ15109 404 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 KIRREL2Q6UWL6 708 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 ZNF610Q8N9Z0 462 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 BHLHE23Q8NDY6 225 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 TTC9Q92623 222 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 PLA2G3Q9NZ20 509 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 MAB21L2Q9Y586 359 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 SPINT1O43278 529 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 IL2RAP01589 272 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 C1QAP02745 245 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 SBK2P0C263 348 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 IL7P13232 177 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 CX3CR1P49238 355 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 VN1R4Q7Z5H5 301 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 PARP16Q8N5Y8 322 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 ARIH2OSQ8N7S6 290 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 LGALS14Q8TCE9 139 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 KCNE4Q8WWG9 221 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 CMC2Q9NRP2 79 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 LANCL2Q9NS86 450 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 P4HTMQ9NXG6 502 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 SLC22A5O76082 557 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 IL2RGP31785 369 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 ERVK-16P61578 105 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 MEF2DQ14814 521 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 KIAA0040Q15053 153 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 LTC4SQ16873 150 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 YIF1BQ5BJH7 314 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 BORAQ6PGQ7 559 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 WDR34Q96EX3 536 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 PRRT1Q99946 306 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 MPPED1O15442 326 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 SNAPC5O75971 98 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 SPI1P17947 270 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 CORO6Q6QEF8 472 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 SELENOIQ9C0D9 397 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 PIGLQ9Y2B2 252 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 KLK4Q9Y5K2 254 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 NUBP2Q9Y5Y2 271 aa13.59□□□□□ -0.23
COL17A1-201ENST00000353479 ISL1P61371 349 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 RIPPLY1Q0D2K3 151 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 FAPQ12884 760 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 RTL6Q6ICC9 239 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 SFXN4Q6P4A7 337 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 PGAP1Q75T13 922 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 TMEM99Q8N816 258 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 OR4K15Q8NH41 348 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 PDCD1LG2Q9BQ51 273 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 ACOXLQ9NUZ1 547 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 LSM5Q9Y4Y9 91 aaKnown RBP13.58□□□□□ -0.24
COL17A1-201ENST00000353479 CBR3O75828 277 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 OR2L13Q8N349 312 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 LRRC20Q8TCA0 184 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 GABARAPL1Q9H0R8 117 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 EHFQ9NZC4 300 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 ASH2LQ9UBL3 628 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 WDR90Q96KV7 1748 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 ABCD3P28288 659 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 TAS2R31P59538 309 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 DUSP2Q05923 314 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 EIF4EBP2Q13542 120 aaPredicted RBP13.58□□□□□ -0.24
COL17A1-201ENST00000353479 HES3Q5TGS1 186 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 RIMKLAQ8IXN7 391 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 OR56B1Q8NGI3 324 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 OR13F1Q8NGS4 319 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 LIPHQ8WWY8 451 aa13.58□□□□□ -0.24
COL17A1-201ENST00000353479 TCEAL3Q969E4 200 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms