RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SMUG1Q53HV7 270 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 CARFQ8N187 725 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 SPEM1Q8N4L4 309 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 ZNF676Q8N7Q3 588 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 BEST4Q8NFU0 473 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 SYNPRQ8TBG9 265 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 GPR119Q8TDV5 335 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 TMEM106AQ96A25 262 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 SCMH1Q96GD3 660 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 MED28Q9H204 178 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 GHITMQ9H3K2 345 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 BEX1Q9HBH7 125 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 SEMA5BQ9P283 1151 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 H0YC42 278 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 MEN1O00255 615 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 SLC16A7O60669 478 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 DCNP07585 359 aaKnown RBP17.47■□□□□ 0.39
COL9A3-201ENST00000343916 IL11P20809 199 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 POLR2HP52434 150 aaKnown RBP17.47■□□□□ 0.39
COL9A3-201ENST00000343916 RNF4P78317 190 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 C1orf140Q5VVS0 124 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 FAM109AQ8N4B1 249 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 SUN5Q8TC36 379 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 KLK11Q9UBX7 282 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 NUBP2Q9Y5Y2 271 aa17.47■□□□□ 0.39
COL9A3-201ENST00000343916 A0A1W2PQ72 361 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 PRSS37A4D1T9 235 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 ZNF593O00488 134 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-201ENST00000343916 NPIPB7O75200 414 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 TIAF1O95411 115 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 FREM3P0C091 2139 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 LCN1P31025 176 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 HOXD11P31277 338 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-201ENST00000343916 INSM1Q01101 510 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-201ENST00000343916 MEP1BQ16820 701 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 COL28A1Q2UY09 1125 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 TMEM255AQ5JRV8 349 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 SIGIRRQ6IA17 410 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 PWWP2BQ6NUJ5 590 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 ZNF574Q6ZN55 896 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-201ENST00000343916 PRSS42Q7Z5A4 293 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 TMPRSS12Q86WS5 348 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 OR11H7Q8NGC8 314 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 OR52I2Q8NH67 350 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 OTOSQ8NHW6 89 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 PMEPA1Q969W9 287 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 MED30Q96HR3 178 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 TAS2R10Q9NYW0 307 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 B9D1Q9UPM9 204 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 RCE1Q9Y256 329 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 CACNA1EQ15878 2313 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 TRBV5-5A0A0J9YX44 114 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 GSTZ1O43708 216 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-201ENST00000343916 HLA-DOBP13765 273 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 CTLA4P16410 223 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 FBXW4P57775 412 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 RPL27P61353 136 aaKnown RBP17.46■□□□□ 0.39
COL9A3-201ENST00000343916 PLA2G7Q13093 441 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 SHBQ15464 509 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 WDR74Q6RFH5 385 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-201ENST00000343916 CREB3L2Q70SY1 520 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 ZNF417Q8TAU3 575 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 PPP1R14AQ96A00 147 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 MS4A3Q96HJ5 214 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 ZNF587Q96SQ5 575 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-201ENST00000343916 ZNF768Q9H5H4 540 aaKnown RBP17.46■□□□□ 0.39
COL9A3-201ENST00000343916 NKIRAS2Q9NYR9 191 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 MUC3AQ02505 3323 aa17.46■□□□□ 0.39
COL9A3-201ENST00000343916 COL6A3P12111 3177 aa17.46■□□□□ 0.38
COL9A3-201ENST00000343916 C7orf66A4D0T2 115 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 ADAM10O14672 748 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 CTDSPLO15194 276 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 FABP7O15540 132 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 GMDSO60547 372 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 MT-ATP6P00846 226 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 TMIGD3P0DMS9 266 aaPredicted RBP17.45■□□□□ 0.38
COL9A3-201ENST00000343916 EGR3Q06889 387 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 WDR38Q5JTN6 314 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 SFRP4Q6FHJ7 346 aaPredicted RBP17.45■□□□□ 0.38
COL9A3-201ENST00000343916 BAIAP2L2Q6UXY1 529 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 LRRTM1Q86UE6 522 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 ZNF519Q8TB69 540 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 SLITRK2Q9H156 845 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 DUSP15Q9H1R2 295 aaPredicted RBP17.45■□□□□ 0.38
COL9A3-201ENST00000343916 ELOVL3Q9HB03 270 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 GTF2A1LQ9UNN4 478 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 ZSCAN5BA6NJL1 495 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 A8MVM7 634 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 NOS1APO75052 506 aaPredicted RBP17.45■□□□□ 0.38
COL9A3-201ENST00000343916 CXCL3P19876 107 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 MAPK3P27361 379 aaPredicted RBP17.45■□□□□ 0.38
COL9A3-201ENST00000343916 KIR3DL2P43630 455 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 PTCRAQ6ISU1 281 aaPredicted RBP17.45■□□□□ 0.38
COL9A3-201ENST00000343916 ZNF767PQ75MW2 155 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 Q7L0L9 218 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 GRINAQ7Z429 371 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 APCDD1LQ8NCL9 501 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 PLPP5Q8NEB5 264 aa17.45■□□□□ 0.38
COL9A3-201ENST00000343916 DACT3Q96B18 629 aaPredicted RBP17.45■□□□□ 0.38
COL9A3-201ENST00000343916 NKX3-1Q99801 234 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms