RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 S100ZQ8WXG8 99 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 KCNS3Q9BQ31 491 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 BARHL1Q9BZE3 327 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 MARCH7Q9H992 704 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 A3GALT2U3KPV4 340 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 MED13Q9UHV7 2174 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 SMIM30A4D0T7 59 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 ARGFXA6NJG6 315 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 AQP7P3A6NL99 342 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 DVL2O14641 736 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 RAMP1O60894 148 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 WDPCPO95876 746 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 CLEC2LP0C7M8 214 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 PSKH1P11801 424 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 BMP4P12644 408 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 GDF1P27539 372 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 RORCP51449 518 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 SIRPAP78324 504 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 ZNF846Q147U1 533 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 CDK5R1Q15078 307 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 OR1C1Q15619 314 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 FAM220AQ7Z4H9 259 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 FAM83FQ8NEG4 500 aaPredicted RBP11.98□□□□□ -0.49
HMGB1-202ENST00000339872 NEIL3Q8TAT5 605 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 PGLYRP3Q96LB9 341 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 WDR12Q9GZL7 423 aaKnown RBP11.98□□□□□ -0.49
HMGB1-202ENST00000339872 PLA2G3Q9NZ20 509 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 ING1Q9UK53 422 aaPredicted RBP11.98□□□□□ -0.49
HMGB1-202ENST00000339872 COA3Q9Y2R0 106 aaPredicted RBP11.98□□□□□ -0.49
HMGB1-202ENST00000339872 TM4SF5O14894 197 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 TRAPPC6AO75865 159 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 OR8G3PP0DMU2 310 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 CD53P19397 219 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 EDNRAP25101 427 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 TGM4P49221 684 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 GDI2P50395 445 aaKnown RBP11.97□□□□□ -0.49
HMGB1-202ENST00000339872 BLVRAP53004 296 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 RAC1P63000 192 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 GLO1Q04760 184 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 HNRNPA0Q13151 305 aaKnown RBP11.97□□□□□ -0.49
HMGB1-202ENST00000339872 DNM1P34Q6PK57 102 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 GALNT16Q8N428 558 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 THEM6Q8WUY1 208 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 SLC25A46Q96AG3 418 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 SMIM19Q96E16 107 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 MNTQ99583 582 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 HES7Q9BYE0 225 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 KCNN2Q9H2S1 579 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 SIAEQ9HAT2 523 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 ZFP64Q9NPA5 681 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 MRPL22Q9NWU5 206 aaKnown RBP11.97□□□□□ -0.49
HMGB1-202ENST00000339872 KCNG2Q9UJ96 466 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 IKZF2Q9UKS7 526 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 BOKQ9UMX3 212 aaPredicted RBP11.97□□□□□ -0.49
HMGB1-202ENST00000339872 POLHQ9Y253 713 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 TMEM14AQ9Y6G1 99 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 ZNF292O60281 2723 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 A6NL46 340 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 CASKO14936 926 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 SEC14L5O43304 696 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 TRAF3IP2O43734 574 aaPredicted RBP11.97□□□□□ -0.49
HMGB1-202ENST00000339872 PRKAR1AP10644 381 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 ZNF43P17038 809 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 GALP22466 123 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 S100A5P33763 92 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 B3GALT5-AS1P59052 145 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 ADAM8P78325 824 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 SRSF6Q13247 344 aaKnown RBP11.97□□□□□ -0.49
HMGB1-202ENST00000339872 TRAM1Q15629 374 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 INAQ16352 499 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 MEP1BQ16820 701 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 ZNF684Q5T5D7 378 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 RPL22L1Q6P5R6 122 aaKnown RBP11.97□□□□□ -0.49
HMGB1-202ENST00000339872 ASCL5Q7RTU5 278 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 GHSRQ92847 366 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 OXGR1Q96P68 337 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 FAM173AQ9BQD7 235 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 MED18Q9BUE0 208 aa11.97□□□□□ -0.49
HMGB1-202ENST00000339872 TRBV2A0A0J9YWF9 115 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 GJE1A6NN92 205 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 ZNF593O00488 134 aaPredicted RBP11.96□□□□□ -0.49
HMGB1-202ENST00000339872 TNFSF11O14788 317 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 OGG1O15527 345 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 RPP14O95059 124 aaKnown RBP11.96□□□□□ -0.49
HMGB1-202ENST00000339872 KRT8P05787 483 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 SPARCP09486 303 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 ALOX5APP20292 161 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 FOXO1Q12778 655 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 ZNF239Q16600 458 aaKnown RBP11.96□□□□□ -0.49
HMGB1-202ENST00000339872 WIPI1Q5MNZ9 446 aaPredicted RBP11.96□□□□□ -0.49
HMGB1-202ENST00000339872 C16orf87Q6PH81 154 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 NHLRC1Q6VVB1 395 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 TMPRSS7Q7RTY8 843 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 BTLAQ7Z6A9 289 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 MFSD4AQ8N468 514 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 YIPF7Q8N8F6 280 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 OR2M7Q8NG81 312 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 OR13C5Q8NGS8 318 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 OTOSQ8NHW6 89 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 SFXN2Q96NB2 322 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms