RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 KHDRBS1Q07666 443 aaKnown RBP eCLIP19.54■□□□□ 0.72
SDC3-202ENST00000339394 SLX4IPQ5VYV7 408 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 LEG1Q6P5S2 330 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 CLEC18BQ6UXF7 455 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 JAZF1Q86VZ6 243 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 CLEC18CQ8NCF0 446 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 SDR9C7Q8NEX9 313 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 MCHR2Q969V1 340 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 NMD3Q96D46 503 aaKnown RBP19.54■□□□□ 0.72
SDC3-202ENST00000339394 RDH12Q96NR8 316 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 TEX12Q9BXU0 123 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 ULBP2Q9BZM5 246 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 SYT4Q9H2B2 425 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 VCXQ9H320 206 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 KCNJ16Q9NPI9 418 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 CMC2Q9NRP2 79 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 VSX1Q9NZR4 365 aaPredicted RBP19.54■□□□□ 0.72
SDC3-202ENST00000339394 COL12A1Q99715 3063 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 ZNF587BE7ETH6 402 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 RPL36A-HNRNPH2H7BZ11 118 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 AHCYL1O43865 530 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 HMGN1P05114 100 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 ASCL1P50553 236 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 ROR2Q01974 943 aaKnown RBP19.53■□□□□ 0.72
SDC3-202ENST00000339394 FMODQ06828 376 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 THEM4Q5T1C6 240 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 NPEPL1Q8NDH3 523 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 ZNF837Q96EG3 531 aaPredicted RBP19.53■□□□□ 0.72
SDC3-202ENST00000339394 RBP7Q96R05 134 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 RBM24Q9BX46 236 aaKnown RBP19.53■□□□□ 0.72
SDC3-202ENST00000339394 GPR35Q9HC97 309 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 B3GAT2Q9NPZ5 323 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 TVP23BQ9NYZ1 205 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 USP9XQ93008 2570 aaPredicted RBP19.53■□□□□ 0.72
SDC3-202ENST00000339394 OR6C68A6NDL8 312 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 E9PQ18 207 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 SURF4O15260 269 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 IGHV1-2P23083 117 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 P2RY6Q15077 328 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 ABHD12BQ7Z5M8 362 aaPredicted RBP19.53■□□□□ 0.72
SDC3-202ENST00000339394 CYB561A3Q8NBI2 242 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 FNDC8Q8TC99 324 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 DDOQ99489 341 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 KLHL21Q9UJP4 597 aa19.53■□□□□ 0.72
SDC3-202ENST00000339394 IGKV1D-43A0A0B4J1Z2 117 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 RIIAD1A6NNX1 92 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 IFNGP01579 166 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 NR2C1P13056 603 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 MPGP29372 298 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 FAM27E3Q08E93 113 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 ITGADQ13349 1161 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 CRMP1Q14194 572 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 SNAPC1Q16533 368 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 FBXL19-AS1Q494R0 122 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 C9orf135Q5VTT2 229 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 CXorf67Q86X51 503 aaPredicted RBP19.52■□□□□ 0.71
SDC3-202ENST00000339394 SLC37A3Q8NCC5 494 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 SSC4DQ8WTU2 575 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 HRASLS5Q96KN8 279 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 SLC38A2Q96QD8 506 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 SNX18Q96RF0 628 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 FAM118AQ9NWS6 357 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 GALNT8Q9NY28 637 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 ELOVL5Q9NYP7 299 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 TAS2R16Q9NYV7 291 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 TENM4Q6N022 2769 aa19.52■□□□□ 0.71
SDC3-202ENST00000339394 HELZ2Q9BYK8 2649 aaKnown RBP19.51■□□□□ 0.71
SDC3-202ENST00000339394 ITGA5P08648 1049 aa19.51■□□□□ 0.71
SDC3-202ENST00000339394 ZNF3P17036 446 aa19.51■□□□□ 0.71
SDC3-202ENST00000339394 COX5AP20674 150 aa19.51■□□□□ 0.71
SDC3-202ENST00000339394 ZNF133P52736 654 aaPredicted RBP19.51■□□□□ 0.71
SDC3-202ENST00000339394 TFF3Q07654 80 aa19.51■□□□□ 0.71
SDC3-202ENST00000339394 DBPQ10586 325 aaPredicted RBP19.51■□□□□ 0.71
SDC3-202ENST00000339394 CEACAM16Q2WEN9 425 aa19.51■□□□□ 0.71
SDC3-202ENST00000339394 C12orf73Q69YU5 71 aa19.51■□□□□ 0.71
SDC3-202ENST00000339394 STAC2Q6ZMT1 411 aa19.51■□□□□ 0.71
SDC3-202ENST00000339394 TSSK2Q96PF2 358 aa19.51■□□□□ 0.71
SDC3-202ENST00000339394 NUAK2Q9H093 628 aa19.51■□□□□ 0.71
SDC3-202ENST00000339394 VCX3BQ9H321 246 aa19.51■□□□□ 0.71
SDC3-202ENST00000339394 LOC100130705A0A1B0GUX0 176 aa19.5■□□□□ 0.71
SDC3-202ENST00000339394 DHHO43323 396 aa19.5■□□□□ 0.71
SDC3-202ENST00000339394 LYZL6O75951 148 aa19.5■□□□□ 0.71
SDC3-202ENST00000339394 RENP00797 406 aa19.5■□□□□ 0.71
SDC3-202ENST00000339394 CTLA4P16410 223 aa19.5■□□□□ 0.71
SDC3-202ENST00000339394 CD79BP40259 229 aa19.5■□□□□ 0.71
SDC3-202ENST00000339394 C10orf128Q5T292 105 aa19.5■□□□□ 0.71
SDC3-202ENST00000339394 SFRP5Q5T4F7 317 aa19.5■□□□□ 0.71
SDC3-202ENST00000339394 SLC25A47Q6Q0C1 308 aa19.5■□□□□ 0.71
SDC3-202ENST00000339394 RPRD1BQ9NQG5 326 aaKnown RBP19.5■□□□□ 0.71
SDC3-202ENST00000339394 NDRG4Q9ULP0 352 aaKnown RBP19.5■□□□□ 0.71
SDC3-202ENST00000339394 GPR52Q9Y2T5 361 aa19.5■□□□□ 0.71
SDC3-202ENST00000339394 FREM1Q5H8C1 2179 aa19.49■□□□□ 0.71
SDC3-202ENST00000339394 DCTN6O00399 190 aa19.49■□□□□ 0.71
SDC3-202ENST00000339394 PRKYO43930 277 aa19.49■□□□□ 0.71
SDC3-202ENST00000339394 SLC16A7O60669 478 aa19.49■□□□□ 0.71
SDC3-202ENST00000339394 TSC22D1Q15714 1073 aa19.49■□□□□ 0.71
SDC3-202ENST00000339394 ETFDHQ16134 617 aa19.49■□□□□ 0.71
SDC3-202ENST00000339394 OR6V1Q8N148 313 aa19.49■□□□□ 0.71
SDC3-202ENST00000339394 ZNF433Q8N7K0 673 aaPredicted RBP19.49■□□□□ 0.71
SDC3-202ENST00000339394 NSMAFQ92636 917 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms