RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 RAB27BO00194 218 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 LEFTY2O00292 366 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF208O43345 1280 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 OR1F1O43749 312 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 IFNA1P01562 189 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 WNT1P04628 370 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 SLC35G6P0C7Q6 338 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 IRF2P14316 349 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 KLRK1P26718 216 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 AKR1C3P42330 323 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 GPR4P46093 362 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 PPOXP50336 477 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 TPPP2P59282 170 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 LCN6P62502 163 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 CSNK1G2P78368 415 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 RAB31Q13636 194 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 BATFQ16520 125 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 PCK2Q16822 640 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 QRICH1Q2TAL8 776 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 COMMD6Q7Z4G1 85 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 VTCN1Q7Z7D3 282 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 CHST14Q8NCH0 376 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 OR51L1Q8NGJ5 315 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 RNASE8Q8TDE3 154 aaKnown RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 DUSP19Q8WTR2 217 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 TVP23CQ96ET8 276 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 PGAM5Q96HS1 289 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 IGSF21Q96ID5 467 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 BANF2Q9H503 90 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 AGO4Q9HCK5 861 aaKnown RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 GPATCH2LQ9NWQ4 482 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 IKZF2Q9UKS7 526 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 HES2Q9Y543 173 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 GAPDHSO14556 408 aaPredicted RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 XRCC3O43542 346 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 HYAL3O43820 417 aaPredicted RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 OR7C2O60412 319 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 TNFSF13O75888 250 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 SOD2P04179 222 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 F3P13726 295 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 CR2P20023 1033 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 GLRA1P23415 457 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 TLX1P31314 330 aaPredicted RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 SLC35G1Q2M3R5 365 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 NRMQ8IXM6 262 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 PNKDQ8N490 385 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF485Q8NCK3 441 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 OR11L1Q8NGX0 322 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 C11orf40Q8WZ69 217 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 ANKRD9Q96BM1 317 aaPredicted RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 SCLYQ96I15 445 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 SLC12A9Q9BXP2 914 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 CNTD2Q9H8S5 307 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 MEPEQ9NQ76 525 aaPredicted RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 ZDHHC3Q9NYG2 299 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 PIN4Q9Y237 131 aaKnown RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 SF3B6Q9Y3B4 125 aaKnown RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 DIP2BQ9P265 1576 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 TLCD2A6NGC4 264 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 RBMXL2O75526 392 aaKnown RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 CTSLP07711 333 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 VEGFAP15692 232 aaPredicted RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 RAB6AP20340 208 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 SOAT1P35610 550 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 ARL2P36404 184 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 ZFP36L2P47974 494 aaKnown RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 GZMMP51124 257 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 NOGQ13253 232 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 PCBP2Q15366 365 aaKnown RBP eCLIP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 UGCGQ16739 394 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 TMEM69Q5SWH9 247 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 COX15Q7KZN9 410 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 KMT5CQ86Y97 462 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF615Q8N8J6 731 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 Q8NFD4 153 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 NIPSNAP3BQ9BS92 247 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 CIPCQ9C0C6 399 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 CLEC5AQ9NY25 188 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 DNAJC27Q9NZQ0 273 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 MARCH2Q9P0N8 246 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 VPS29Q9UBQ0 182 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 TUBD1Q9UJT1 453 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 TBX21Q9UL17 535 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 FNDC3AQ9Y2H6 1198 aaKnown RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 NOP16Q9Y3C1 178 aaKnown RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF337Q9Y3M9 751 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 PRSS21Q9Y6M0 314 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 ANKUB1A6NFN9 424 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF814B7Z6K7 855 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 SOX15O60248 233 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 OR5G3P0C626 314 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 TMEM225BP0DP42 221 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 NPY4RP50391 375 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 NOVA1P51513 510 aaKnown RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 HNRNPA3P51991 378 aaKnown RBP3.81□□□□□ -1.8
NEDD4-201ENST00000338963 AKR1C1Q04828 323 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 EGR3Q06889 387 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 NFATC2Q13469 925 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 VAMP3Q15836 100 aa3.81□□□□□ -1.8
NEDD4-201ENST00000338963 UPP1Q16831 310 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms