RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 MSMO1Q15800 293 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 ZNF684Q5T5D7 378 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 FCRL6Q6DN72 434 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 PGAP1Q75T13 922 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 OR5D18Q8NGL1 313 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 PCNPQ8WW12 178 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 C22orf15Q8WYQ4 148 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 SLAMF9Q96A28 289 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 YIPF6Q96EC8 236 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 PKMYT1Q99640 499 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 OR52A5Q9H2C5 316 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 WASH6PQ9NQA3 447 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 SPHK1Q9NYA1 384 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 A0A0B4J2A0 478 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 E9PI62 339 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 LILRB5O75023 590 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 CALCBP10092 127 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 DPP4P27487 766 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 EPHA2P29317 976 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 MRPL19P49406 292 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 ADPRHP54922 357 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 GABREP78334 506 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 RPP30P78346 268 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 BDH1Q02338 343 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 MZT1Q08AG7 82 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 ELAVL1Q15717 326 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 ANKRD33Q7Z3H0 272 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 LRRC18Q8N456 261 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 PLPP7Q8NBV4 271 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 OR4D6Q8NGJ1 314 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 FGGYQ96C11 551 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 AP1S3Q96PC3 154 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 ARPC5LQ9BPX5 153 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 SEC22CQ9BRL7 303 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 TCEAL7Q9BRU2 100 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 NTN4Q9HB63 628 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 SHPKQ9UHJ6 478 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 NUP214P35658 2090 aaPredicted RBP9.88□□□□□ -0.83
CD44-201ENST00000263398 COL4A5P29400 1685 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 H3BNC9 293 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 MSTNO14793 375 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 SIGLEC6O43699 453 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 PRICKLE3O43900 615 aaPredicted RBP9.88□□□□□ -0.83
CD44-201ENST00000263398 ARL3P36405 182 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 CD79BP40259 229 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 WDR88Q6ZMY6 472 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 PRSS45Q7RTY3 260 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 SYS1Q8N2H4 156 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 RNF141Q8WVD5 230 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 OPALINQ96PE5 141 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 TMEM43Q9BTV4 400 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 ZMAT3Q9HA38 289 aaKnown RBP9.88□□□□□ -0.83
CD44-201ENST00000263398 EP400Q96L91 3159 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 MCRIP1C9JLW8 97 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 D6RAR5 112 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 TOR1AO14656 332 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 ITGB2P05107 769 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 ARG2P78540 354 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 CDC20Q12834 499 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 FGL2Q14314 439 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 LPCAT3Q6P1A2 487 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 CD300LGQ6UXG3 332 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 TTC3P53804 2025 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 M0QYG6 137 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 STK17BO94768 372 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 CD1CP29017 333 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 DIO1P49895 249 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 RPL27P61353 136 aaKnown RBP9.88□□□□□ -0.83
CD44-201ENST00000263398 SRPXP78539 464 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 AQP6Q13520 282 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 LPAL2Q16609 132 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 Q6ZNB5 142 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 H1FNTQ75WM6 255 aaPredicted RBP9.88□□□□□ -0.83
CD44-201ENST00000263398 DVL3Q92997 716 aaPredicted RBP9.88□□□□□ -0.83
CD44-201ENST00000263398 ZNF775Q96BV0 537 aaPredicted RBP9.88□□□□□ -0.83
CD44-201ENST00000263398 ARL5BQ96KC2 179 aa9.88□□□□□ -0.83
CD44-201ENST00000263398 TIMM8BQ9Y5J9 83 aaPredicted RBP9.88□□□□□ -0.83
CD44-201ENST00000263398 ARID1AO14497 2285 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 FGF17O60258 216 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 EVX1P49640 407 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 PPT1P50897 306 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 DCXRQ7Z4W1 244 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 MDGA2Q7Z553 956 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 MARCH3Q86UD3 253 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 WDR5BQ86VZ2 330 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 FRZBQ92765 325 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 OR51B6Q9H340 312 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 OCEL1Q9H607 264 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 IL21Q9HBE4 155 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 ACOXLQ9NUZ1 547 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 CHST2Q9Y4C5 530 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 A0A1W2PPV4 95 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 POM121BA6NF01 834 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 TMEM221A6NGB7 291 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 TMEM200CA6NKL6 621 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 SMLR1H3BR10 107 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 SSX4O60224 188 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 CD22P20273 847 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 SSR4P51571 173 aa9.87□□□□□ -0.83
CD44-201ENST00000263398 TPMTP51580 245 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms