RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ZMAT3Q9HA38 289 aaKnown RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 LMAN1LQ9HAT1 526 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 TMEM138Q9NPI0 162 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ARID1AO14497 2285 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 IGKV1D-42A0A075B6H8 117 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 A0A087WUJ7 227 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ANKRD20A5PA0PJZ0 165 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 A6NCN8 305 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ELOA3DA6NLF2 546 aaPredicted RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 C11orf98E9PRG8 122 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 CREBL2O60519 120 aaPredicted RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 WISP1O95388 367 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 TGM6O95932 706 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 SLC35E2P0CK97 266 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 CT45A8P0DMV1 189 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 CT45A9P0DMV2 189 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ZNF35P13682 527 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 RAB3AP20336 220 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 H2BFSP57053 126 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 LTBQ06643 244 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 GAS6Q14393 721 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 CSRP2Q16527 193 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ELOA3BQ3SY89 546 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 CT45A2Q5DJT8 189 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 FAM69AQ5T7M9 428 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 DCAF12L2Q5VW00 463 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 LINC00114Q6XXX2 140 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 DPY19L2P2Q6ZN68 376 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 DND1Q8IYX4 353 aaKnown RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 ZNF321PQ8N8H1 164 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ELOA3Q8NG57 546 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 SCARF2Q96GP6 870 aaPredicted RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 VSTM2LQ96N03 204 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 DMRTA2Q96SC8 542 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 TINAGL1Q9GZM7 467 aaPredicted RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 ARL6Q9H0F7 186 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 TINAGQ9UJW2 476 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 MOKQ9UQ07 419 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 NPTNQ9Y639 398 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 WDFY3Q8IZQ1 3526 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 A0A1B0GUH1 482 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 CDC14CA4D256 554 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 C2orf74A8MZ97 194 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 C10orf142B7Z368 130 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 GOSR2O14653 212 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 PDCD5O14737 125 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 CTDSPLO15194 276 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 GLCEO94923 617 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 AKR7A3O95154 331 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 AK1P00568 194 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 LIPCP11150 499 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 NFYAP23511 347 aaPredicted RBP9.12□□□□□ -0.95
LIG3-201ENST00000262327 Q6ZSR6 202 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 FAM220AQ7Z4H9 259 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 SLC35F3Q8IY50 421 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 UBALD2Q8IYN6 164 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 BCORP1Q8N888 145 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 OR4C16Q8NGL9 310 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 MAFAQ8NHW3 353 aaPredicted RBP9.12□□□□□ -0.95
LIG3-201ENST00000262327 FAM174AQ8TBP5 190 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 STK35Q8TDR2 534 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 SYT4Q9H2B2 425 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 SLC6A15Q9H2J7 730 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 HPF1Q9NWY4 346 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 SLC6A5Q9Y345 797 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 ZNF337Q9Y3M9 751 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 TRAV18A0A075B6X5 111 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 PLSCR5A0PG75 271 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 SERINC4A6NH21 518 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 UPK3AO75631 287 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 HLA-DQA2P01906 255 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 RBM34P42696 430 aaKnown RBP9.12□□□□□ -0.95
LIG3-201ENST00000262327 GRK6P43250 576 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 CAPZA2P47755 286 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 HOXA1P49639 335 aaPredicted RBP9.12□□□□□ -0.95
LIG3-201ENST00000262327 GPR143P51810 404 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 RAG2P55895 527 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 ILF3Q12906 894 aaKnown RBP eCLIP9.12□□□□□ -0.95
LIG3-201ENST00000262327 ALKBH1Q13686 389 aaKnown RBP9.12□□□□□ -0.95
LIG3-201ENST00000262327 GGTLC2Q14390 218 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 TUSC1Q2TAM9 212 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 Q499Y3 187 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 ALG10Q5BKT4 473 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 C1QL3Q5VWW1 255 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 LRRN1Q6UXK5 716 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 ZNF550Q7Z398 422 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 BIVMQ86UB2 503 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 OR13H1Q8NG92 308 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 NSMAFQ92636 917 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 HAVCR1Q96D42 359 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 Q9N2J8 555 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 SDHAF2Q9NX18 166 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 LAMP5Q9UJQ1 280 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 FBXL21Q9UKT6 434 aa9.12□□□□□ -0.95
LIG3-201ENST00000262327 MCRIP1C9JLW8 97 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 GPRIN2O60269 458 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 ECDO95905 644 aaPredicted RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 CSN2P05814 226 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 LPLP06858 475 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 IFNGR1P15260 489 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms