RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RPL23AP62750 156 aaKnown RBP1.75□□□□□ -2.13
CD44-239ENST00000639002 REG3AQ06141 175 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 IL18Q14116 193 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 SELPLGQ14242 412 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 GRB7Q14451 532 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 DPYSL2Q16555 572 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 EXOC3L2Q2M3D2 409 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 ARMC12Q5T9G4 340 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 AADACL4Q5VUY2 407 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 HSDL2Q6YN16 418 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 CCDC80Q76M96 950 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 NEGR1Q7Z3B1 354 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 TMCO2Q7Z6W1 182 aaPredicted RBP1.75□□□□□ -2.13
CD44-239ENST00000639002 PSTKQ8IV42 348 aaKnown RBP1.75□□□□□ -2.13
CD44-239ENST00000639002 SLC35F2Q8IXU6 374 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 PDCL2Q8N4E4 241 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 FTMTQ8N4E7 242 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 OR2T34Q8NGX1 318 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 RASD2Q96D21 266 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 TCEANC2Q96MN5 208 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 RBM14Q96PK6 669 aaKnown RBP1.75□□□□□ -2.13
CD44-239ENST00000639002 SECISBP2Q96T21 854 aaKnown RBP1.75□□□□□ -2.13
CD44-239ENST00000639002 SLC35A5Q9BS91 424 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 DEFB127Q9H1M4 99 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 RHBGQ9H310 441 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 EXO5Q9H790 373 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 ELOVL3Q9HB03 270 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 LZTFL1Q9NQ48 299 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 SLC17A5Q9NRA2 495 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 HYPKQ9NX55 129 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 STK38LQ9Y2H1 464 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 HEBP2Q9Y5Z4 205 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 HECW2Q9P2P5 1572 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 CHD8Q9HCK8 2581 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 NLRC5Q86WI3 1866 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 ZNF462Q96JM2 2506 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 PLAC8L1A1L4L8 177 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 ZNF716A6NP11 495 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 ZNF705GA8MUZ8 300 aaPredicted RBP1.74□□□□□ -2.13
CD44-239ENST00000639002 SPECC1L-ADORA2AF8WAN1 911 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 ZSCAN12O43309 604 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 CHMP2AO43633 222 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 CACNG3O60359 315 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 E2F6O75461 281 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 STAMBPO95630 424 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 IL1BP01584 269 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 KLK3P07288 261 aaPredicted RBP1.74□□□□□ -2.13
CD44-239ENST00000639002 POLR2MP0CAP2 368 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 ZNF735P0CB33 412 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 PNMTP11086 282 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 SLC2A3P11169 496 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 HPGDP15428 266 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 TPSB2P20231 275 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 NT5EP21589 574 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 DRD5P21918 477 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 GCAP28676 217 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 CALCRP30988 508 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 FMO3P31513 532 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 GLP1RP43220 463 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 RGS4P49798 205 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 GPM6AP51674 278 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 DNAJC3Q13217 504 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 ARHGAP19Q14CB8 494 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 TPSAB1Q15661 275 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 GGTA1PQ4G0N0 100 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 LRRC10Q5BKY1 277 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 FBXO48Q5FWF7 155 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 PHYHD1Q5SRE7 291 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 BEND3Q5T5X7 828 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 CARD17Q5XLA6 110 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 TTC19Q6DKK2 380 aaPredicted RBP1.74□□□□□ -2.13
CD44-239ENST00000639002 FAM71F2Q6NXP2 309 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 LYPD2Q6UXB3 125 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 Q6ZN92 141 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 SHISA6Q6ZSJ9 500 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 CENPQQ7L2Z9 268 aaPredicted RBP1.74□□□□□ -2.13
CD44-239ENST00000639002 FAM228AQ86W67 206 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 GRAMD2AQ8IUY3 354 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 CEP112Q8N8E3 955 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 C15orf56Q8N910 161 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 LINC00304Q8N9R0 145 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 SPERTQ8NA61 448 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 DRAXINQ8NBI3 349 aaPredicted RBP1.74□□□□□ -2.13
CD44-239ENST00000639002 CATSPER1Q8NEC5 780 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 CCDC54Q8NEL0 328 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 SPATA4Q8NEY3 305 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 OR4F15Q8NGB8 312 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 OR5L2Q8NGL0 311 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 OR8K3Q8NH51 312 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 SLC2A14Q8TDB8 520 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 SMARCD2Q92925 531 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 LRRC58Q96CX6 371 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 IFT74Q96LB3 600 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 RPRD1AQ96P16 312 aaPredicted RBP1.74□□□□□ -2.13
CD44-239ENST00000639002 PSKH2Q96QS6 385 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 SIKE1Q9BRV8 207 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 RAB34Q9BZG1 259 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 DNTTIP1Q9H147 329 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 CLMPQ9H6B4 373 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 HAUS4Q9H6D7 363 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms