RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 GABPB1Q06547 395 aaPredicted RBP17.82■□□□□ 0.44
PTCD3-220ENST00000627371 TOP3AQ13472 1001 aaPredicted RBP17.82■□□□□ 0.44
PTCD3-220ENST00000627371 CEACAM16Q2WEN9 425 aa17.82■□□□□ 0.44
PTCD3-220ENST00000627371 FAM205BPQ63HN1 556 aa17.82■□□□□ 0.44
PTCD3-220ENST00000627371 NOXO1Q8NFA2 376 aa17.82■□□□□ 0.44
PTCD3-220ENST00000627371 OR1K1Q8NGR3 316 aa17.82■□□□□ 0.44
PTCD3-220ENST00000627371 FANK1Q8TC84 345 aa17.82■□□□□ 0.44
PTCD3-220ENST00000627371 ZNF837Q96EG3 531 aaPredicted RBP17.82■□□□□ 0.44
PTCD3-220ENST00000627371 TSPAN32Q96QS1 320 aa17.82■□□□□ 0.44
PTCD3-220ENST00000627371 KATNB1Q9BVA0 655 aa17.82■□□□□ 0.44
PTCD3-220ENST00000627371 MRPL13Q9BYD1 178 aaKnown RBP17.82■□□□□ 0.44
PTCD3-220ENST00000627371 GLTPQ9NZD2 209 aa17.82■□□□□ 0.44
PTCD3-220ENST00000627371 DNAJB9Q9UBS3 223 aa17.82■□□□□ 0.44
PTCD3-220ENST00000627371 ZNF346Q9UL40 294 aaKnown RBP17.82■□□□□ 0.44
PTCD3-220ENST00000627371 ITPR2Q14571 2701 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 HRNRQ86YZ3 2850 aaPredicted RBP17.81■□□□□ 0.44
PTCD3-220ENST00000627371 CTAG2O75638 210 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 CDH2P19022 906 aaPredicted RBP17.81■□□□□ 0.44
PTCD3-220ENST00000627371 IST1P53990 364 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 CLRN1P58418 232 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 PPA1Q15181 289 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 HIST3H3Q16695 136 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 SMARCD3Q6STE5 483 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 THSD4Q6ZMP0 1018 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 WFDC8Q8IUA0 241 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 AQP11Q8NBQ7 271 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 ZNF519Q8TB69 540 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 MUCL1Q96DR8 90 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 SLC17A5Q9NRA2 495 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 ARMC1Q9NVT9 282 aa17.81■□□□□ 0.44
PTCD3-220ENST00000627371 APCP25054 2843 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 ARRDC5A6NEK1 342 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 DEFB108AA8MXU0 73 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 ZNF99A8MXY4 864 aaPredicted RBP17.8■□□□□ 0.44
PTCD3-220ENST00000627371 SIAH2O43255 324 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 DEAF1O75398 565 aaPredicted RBP17.8■□□□□ 0.44
PTCD3-220ENST00000627371 TIPRLO75663 272 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 GASTP01350 101 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 HRGP04196 525 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 HOXC12P31275 282 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 ACTR3P61158 418 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 ERVK-25P63136 954 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 C1QTNF12Q5T7M4 302 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 ANKRD16Q6P6B7 361 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 SEZ6L2Q6UXD5 910 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 ZNF620Q6ZNG0 422 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 FAM122BQ7Z309 247 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 TMEM179BQ7Z7N9 219 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 OR10G2Q8NGC3 310 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 GIPC3Q8TF64 312 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 HDAC2Q92769 488 aaKnown RBP17.8■□□□□ 0.44
PTCD3-220ENST00000627371 RAB3IPQ96QF0 476 aaPredicted RBP17.8■□□□□ 0.44
PTCD3-220ENST00000627371 KCNK17Q96T54 332 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 DGCR6LQ9BY27 220 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 OR52D1Q9H346 318 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 NELFAQ9H3P2 528 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 NRIP3Q9NQ35 241 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 RASSF1Q9NS23 344 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 MGAT4BQ9UQ53 548 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 AMDHD2Q9Y303 409 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 ADAM18Q9Y3Q7 739 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 SLC25A15Q9Y619 301 aa17.8■□□□□ 0.44
PTCD3-220ENST00000627371 A6NIZ1 184 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 E2F6O75461 281 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 ACVR1BP36896 505 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 RAP1BP61224 184 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 RAP1AP62834 184 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 ARF1P84077 181 aaKnown RBP17.79■□□□□ 0.44
PTCD3-220ENST00000627371 RFX4Q33E94 735 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 TBRG1Q3YBR2 411 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 HIKESHIQ53FT3 197 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 BEX5Q5H9J7 111 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 LRFN4Q6PJG9 635 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 DPY19L2P2Q6ZN68 376 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 TMEM200AQ86VY9 491 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 ARIH2OSQ8N7S6 290 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 WDR31Q8NA23 367 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 SYT14Q8NB59 555 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 OR52N5Q8NH56 324 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 MAGEE2Q8TD90 523 aaPredicted RBP17.79■□□□□ 0.44
PTCD3-220ENST00000627371 BCL2L2Q92843 193 aaPredicted RBP17.79■□□□□ 0.44
PTCD3-220ENST00000627371 ALG12Q9BV10 488 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 NGBQ9NPG2 151 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 OBP2BQ9NPH6 170 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 GRHPRQ9UBQ7 328 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 IL20RAQ9UHF4 553 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 AP4S1Q9Y587 144 aa17.79■□□□□ 0.44
PTCD3-220ENST00000627371 HEATR1Q9H583 2144 aaKnown RBP17.78■□□□□ 0.44
PTCD3-220ENST00000627371 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.78■□□□□ 0.44
PTCD3-220ENST00000627371 QDPRP09417 244 aa17.78■□□□□ 0.44
PTCD3-220ENST00000627371 NR2C1P13056 603 aa17.78■□□□□ 0.44
PTCD3-220ENST00000627371 SLC6A6P31641 620 aa17.78■□□□□ 0.44
PTCD3-220ENST00000627371 ZNF133P52736 654 aaPredicted RBP17.78■□□□□ 0.44
PTCD3-220ENST00000627371 KPNB1Q14974 876 aaKnown RBP17.78■□□□□ 0.44
PTCD3-220ENST00000627371 GPR139Q6DWJ6 353 aa17.78■□□□□ 0.44
PTCD3-220ENST00000627371 ALKBH2Q6NS38 261 aa17.78■□□□□ 0.44
PTCD3-220ENST00000627371 RPL13AP3Q6NVV1 102 aa17.78■□□□□ 0.44
PTCD3-220ENST00000627371 KLHL24Q6TFL4 600 aa17.78■□□□□ 0.44
PTCD3-220ENST00000627371 ZNF627Q7L945 461 aa17.78■□□□□ 0.44
PTCD3-220ENST00000627371 MCHR2Q969V1 340 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms