RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 SKP2Q13309 424 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 C11orf87Q6NUJ2 197 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 PLBD1Q6P4A8 553 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 WFIKKN2Q8TEU8 576 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 FOXJ2Q9P0K8 574 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 ZNF724A8MTY0 619 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 WDR1O75083 606 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 ITGA5P08648 1049 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SRMP19623 302 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 NOVA1P51513 510 aaKnown RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 PLP1P60201 277 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SOX4Q06945 474 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SLC18B1Q6NT16 456 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 VWA1Q6PCB0 445 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 FAM151BQ6UXP7 276 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 OR2G3Q8NGZ4 309 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 ACTR3CQ9C0K3 210 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 TMEM9BQ9NQ34 198 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 AGO1Q9UL18 857 aaKnown RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 G3V3Q6 166 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 HPP00738 406 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 HPNP05981 417 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SLC25A4P12235 298 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 NOGQ13253 232 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SGCGQ13326 291 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 LMO3Q8TAP4 145 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SEC22AQ96IW7 307 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 HBEGFQ99075 208 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 ATG101Q9BSB4 218 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 NTMT1Q9BV86 223 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 ELOVL4Q9GZR5 314 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 CRTAC1Q9NQ79 661 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 LSM5Q9Y4Y9 91 aaKnown RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SSC5DA1L4H1 1573 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SNRPBP14678 240 aaKnown RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 ZNF345Q14585 488 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SFRP5Q5T4F7 317 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 ACSM5Q6NUN0 579 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 LBX2Q6XYB7 198 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 OR2AK2Q8NG84 335 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 ORAOV1Q8WV07 137 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 TBL1XR1Q9BZK7 514 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 LAMP3Q9UQV4 416 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 NDUFS6O75380 124 aaKnown RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 TEAD2Q15562 447 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 ZNF528Q3MIS6 628 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 PLA1AQ53H76 456 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 LANCL3Q6ZV70 420 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 ABCA7Q8IZY2 2146 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 MIB2Q96AX9 1013 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 FCRL2Q96LA5 508 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 RNF167Q9H6Y7 350 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 PLEKHA1Q9HB21 404 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 DNAJB11Q9UBS4 358 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 PTGDR2Q9Y5Y4 395 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 TRBV11-1A0A0K0K1C0 115 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 TNFSF4P23510 183 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 MC4RP32245 332 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 GALNSP34059 522 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 CRYBB2P43320 205 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SLC11A1P49279 550 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 HBG1P69891 147 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 HBG2P69892 147 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 NAAAQ02083 359 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SLC10A2Q12908 348 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 PCBP2Q15366 365 aaKnown RBP eCLIP4.59□□□□□ -1.673e-9■■■□□ 17.8
VPS13D-213ENST00000613099 SMAD2Q15796 467 aaKnown RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 WSCD1Q658N2 575 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 OR4B1Q8NGF8 309 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 APH1AQ96BI3 265 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SIRT3Q9NTG7 399 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-213ENST00000613099 CBLCQ9ULV8 474 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 LOC100289279A0A1B0GTE1 492 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 CH25HO95992 272 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SULT1A1P50225 295 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 C9orf131Q5VYM1 1079 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SNX22Q96L94 193 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 COLEC11Q9BWP8 271 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 SMOC2Q9H3U7 446 aa4.59□□□□□ -1.67
VPS13D-213ENST00000613099 MTMR11A4FU01 709 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 ITGB1BP1O14713 200 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 SOX15O60248 233 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 HSPB3Q12988 150 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 HLA-BQ31612 363 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 MANEALQ5VSG8 457 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 RNLSQ5VYX0 342 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 CBLL1Q75N03 491 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 CLEC10AQ8IUN9 316 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 LGALS14Q8TCE9 139 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 WDR18Q9BV38 432 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 TUBA4BQ9H853 241 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 SPTBN1Q01082 2364 aaKnown RBP4.59□□□□□ -1.68
VPS13D-213ENST00000613099 TRAV1-2A0A0B4J238 106 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 MEIS3P2A8K0S8 358 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 GSTZ1O43708 216 aaPredicted RBP4.59□□□□□ -1.68
VPS13D-213ENST00000613099 KITLGP21583 273 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 HMGCS2P54868 508 aa4.59□□□□□ -1.68
VPS13D-213ENST00000613099 CBX2Q14781 532 aaPredicted RBP4.59□□□□□ -1.68
VPS13D-213ENST00000613099 GLYR1Q49A26 553 aaPredicted RBP4.59□□□□□ -1.68
VPS13D-213ENST00000613099 OR5AK2Q8NH90 309 aa4.59□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms