RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TNFSF14O43557 240 aa18.83■□□□□ 0.61
UPF1-207ENST00000599848 FPR3P25089 353 aa18.83■□□□□ 0.61
UPF1-207ENST00000599848 PTAFRP25105 342 aa18.83■□□□□ 0.61
UPF1-207ENST00000599848 PNLIPRP2P54317 469 aa18.83■□□□□ 0.61
UPF1-207ENST00000599848 HOXC5Q00444 222 aa18.83■□□□□ 0.61
UPF1-207ENST00000599848 NXNL2Q5VZ03 156 aa18.83■□□□□ 0.61
UPF1-207ENST00000599848 ERVMER34-1Q9H9K5 563 aa18.83■□□□□ 0.61
UPF1-207ENST00000599848 OR52A1Q9UKL2 312 aa18.83■□□□□ 0.61
UPF1-207ENST00000599848 TUSC2O75896 110 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 NAGAP17050 411 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 ETV4P43268 484 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 B3GLCTQ6Y288 498 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 STK35Q8TDR2 534 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 TMIGD2Q96BF3 282 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 ZIC5Q96T25 663 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 SELENOIQ9C0D9 397 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 ANKRD10Q9NXR5 420 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 NOTOA8MTQ0 251 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 CDK1P06493 297 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 THBS1P07996 1170 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 SSTR4P31391 388 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 ASTLQ6HA08 431 aaPredicted RBP18.83■□□□□ 0.6
UPF1-207ENST00000599848 USP51Q70EK9 711 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 OR6M1Q8NGM8 313 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 OR56B4Q8NH76 319 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 CNTNAP3BQ96NU0 1288 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 NAV1Q8NEY1 1877 aa18.83■□□□□ 0.6
UPF1-207ENST00000599848 PPT1P50897 306 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 LILRA2Q8N149 483 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 BPIFB2Q8N4F0 458 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 GPBAR1Q8TDU6 330 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 NECAP2Q9NVZ3 263 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 ACHEP22303 614 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 GPR85P60893 370 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 EDDM3AQ14507 147 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 HABP2Q14520 560 aaPredicted RBP18.82■□□□□ 0.6
UPF1-207ENST00000599848 THEM4Q5T1C6 240 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 CA5BP1Q8WTZ4 195 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 LIN37Q96GY3 246 aaPredicted RBP18.82■□□□□ 0.6
UPF1-207ENST00000599848 DCLRE1CQ96SD1 692 aaKnown RBP18.82■□□□□ 0.6
UPF1-207ENST00000599848 RAB22AQ9UL26 194 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 PLA2G7Q13093 441 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 TMEM246Q9BRR3 403 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 MITFO75030 526 aaPredicted RBP18.82■□□□□ 0.6
UPF1-207ENST00000599848 TEAD1P28347 426 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 ATPAF1Q5TC12 328 aaPredicted RBP18.82■□□□□ 0.6
UPF1-207ENST00000599848 C18orf63Q68DL7 685 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 CNIH2Q6PI25 160 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 FAM185AQ8N0U4 392 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 FUNDC2Q9BWH2 189 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 OR2B2Q9GZK3 357 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 GLIPR2Q9H4G4 154 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 CXXC1Q9P0U4 656 aaPredicted RBP18.82■□□□□ 0.6
UPF1-207ENST00000599848 HDGFL3Q9Y3E1 203 aa18.82■□□□□ 0.6
UPF1-207ENST00000599848 YIF1BQ5BJH7 314 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 ESPNLQ6ZVH7 1005 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 ZNF534Q76KX8 674 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.81■□□□□ 0.69e-6■■■□□ 15.9
UPF1-207ENST00000599848 GTF2H4Q92759 462 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 SEMA4CQ9C0C4 833 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 MBNL1Q9NR56 388 aaKnown RBP18.81■□□□□ 0.6
UPF1-207ENST00000599848 PLCXD1Q9NUJ7 323 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 TBC1D29Q9UFV1 150 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 FOXA1P55317 472 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 ZNF836Q6ZNA1 936 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 CPNE4Q96A23 557 aaPredicted RBP18.81■□□□□ 0.6
UPF1-207ENST00000599848 TXLNGYQ9BZA5 131 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 TMEM38AQ9H6F2 299 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 C21orf33P30042 268 aaPredicted RBP18.81■□□□□ 0.6
UPF1-207ENST00000599848 OR2AE1Q8NHA4 323 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 OXGR1Q96P68 337 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 TNFRSF13CQ96RJ3 184 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 CHD4Q14839 1912 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 M0R296 226 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 ZNF93P35789 620 aaPredicted RBP18.81■□□□□ 0.6
UPF1-207ENST00000599848 GK2Q14410 553 aaPredicted RBP18.81■□□□□ 0.6
UPF1-207ENST00000599848 FCRL6Q6DN72 434 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 RGS7BPQ6MZT1 257 aaPredicted RBP18.81■□□□□ 0.6
UPF1-207ENST00000599848 BEST4Q8NFU0 473 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 SLC38A5Q8WUX1 472 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 SLC6A17Q9H1V8 727 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 NRIP3Q9NQ35 241 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 SNCGO76070 127 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 OR8U8P0C7N1 319 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 GNB3P16520 340 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 TBXA2RP21731 343 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 F2RP25116 425 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 TGM4P49221 684 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 HEPHL1Q6MZM0 1159 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 ACBD4Q8NC06 268 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 SECTM1Q8WVN6 248 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 PLK3Q9H4B4 646 aa18.81■□□□□ 0.6
UPF1-207ENST00000599848 ARFGEF2Q9Y6D5 1785 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 CCDC163A0A0D9SF12 145 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 TSPAN11A1L157 253 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 HSPB2A8KAH6 182 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 GYPBP06028 91 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 HNF1AP20823 631 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 HSPB2Q16082 182 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 C6orf89Q6UWU4 347 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms