RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 NIPAL3Q6P499 406 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF773Q6PK81 442 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 C19orf48Q6RUI8 117 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 AAED1Q7RTV5 226 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 Q8NA96 180 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 PROKR2Q8NFJ6 384 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 RNF128Q8TEB7 428 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 RNFT2Q96EX2 444 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 TMEM80Q96HE8 168 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 NMNAT2Q9BZQ4 307 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 CCDC90BQ9GZT6 254 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 MED20Q9H944 212 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 RPRD1BQ9NQG5 326 aaKnown RBP13.58□□□□□ -0.24
TRIM28-209ENST00000597423 IGF2RP11717 2491 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 PTPRQQ9UMZ3 2332 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 TRIM64A6NGJ6 449 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF716A6NP11 495 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 SLC16A7O60669 478 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 RAMP1O60894 148 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 SLC43A1O75387 559 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 KHDRBS3O75525 346 aaKnown RBP13.57□□□□□ -0.24
TRIM28-209ENST00000597423 GLCEO94923 617 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 YES1P07947 543 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 SPI1P17947 270 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 DCKP27707 260 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 SLC35A2P78381 396 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF91Q05481 1191 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 ST3GAL4Q11206 333 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 OR2A2Q6IF42 318 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 AHSA2Q719I0 299 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 BCDIN3DQ7Z5W3 292 aaKnown RBP13.57□□□□□ -0.24
TRIM28-209ENST00000597423 SVOPQ8N4V2 548 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 POMGNT2Q8NAT1 580 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 OR6N1Q8NGY5 312 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 FNDC9Q8TBE3 224 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 WNT2BQ93097 391 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 TMEM45BQ96B21 275 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 CRELD1Q96HD1 420 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 KCNK17Q96T54 332 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 EMC6Q9BV81 110 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 MRPS26Q9BYN8 205 aaKnown RBP13.57□□□□□ -0.24
TRIM28-209ENST00000597423 SYT4Q9H2B2 425 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 B3GAT2Q9NPZ5 323 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 ASB6Q9NWX5 421 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 TNFRSF10DQ9UBN6 386 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 NOSIPQ9Y314 301 aaKnown RBP13.57□□□□□ -0.24
TRIM28-209ENST00000597423 FLVCR1Q9Y5Y0 555 aa13.57□□□□□ -0.24
TRIM28-209ENST00000597423 ANKRD11Q6UB99 2663 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-209ENST00000597423 FIGNL2A6NMB9 653 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 TTLL8A6PVC2 850 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 WDR1O75083 606 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 MRPL33O75394 65 aaKnown RBP13.56□□□□□ -0.24
TRIM28-209ENST00000597423 CLPTM1O96005 669 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 CDK1P06493 297 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 MYL12AP19105 171 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 SLC2A5P22732 501 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 GSTT1P30711 240 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 SLC15A1P46059 708 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 CSNK1A1P48729 337 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 GLO1Q04760 184 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 CAMK2DQ13557 499 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 C3AR1Q16581 482 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF585AQ6P3V2 769 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 TMEM154Q6P9G4 183 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 PRSS48Q7RTY5 328 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 ZBTB46Q86UZ6 589 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 ZIC4Q8N9L1 334 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 SYT14Q8NB59 555 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 BBS1Q8NFJ9 593 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 OR5M9Q8NGP3 310 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 OR9Q1Q8NGQ5 310 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 SNRNP40Q96DI7 357 aaKnown RBP13.56□□□□□ -0.24
TRIM28-209ENST00000597423 TRIB1Q96RU8 372 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 TM9SF2Q99805 663 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 MRPL13Q9BYD1 178 aaKnown RBP13.56□□□□□ -0.24
TRIM28-209ENST00000597423 NUAK2Q9H093 628 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 RERGLQ9H628 205 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 BCO1Q9HAY6 547 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 FGF20Q9NP95 211 aaPredicted RBP13.56□□□□□ -0.24
TRIM28-209ENST00000597423 FKBP14Q9NWM8 211 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 ERVK-18Q9QC07 812 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 B9D1Q9UPM9 204 aa13.56□□□□□ -0.24
TRIM28-209ENST00000597423 EXOGQ9Y2C4 368 aaKnown RBP13.56□□□□□ -0.24
TRIM28-209ENST00000597423 TNRC6AQ8NDV7 1962 aaKnown RBP13.56□□□□□ -0.24
TRIM28-209ENST00000597423 DMXL2Q8TDJ6 3036 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 H7C1C5 153 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 PRRG2O14669 202 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 RAB36O95755 333 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 PGA4P0DJD7 388 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 PGA3P0DJD8 388 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 ABOP16442 354 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 KLK2P20151 261 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 LCN6P62502 163 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 RUNX1T1Q06455 604 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 CARD17Q5XLA6 110 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 GFRALQ6UXV0 394 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 OR6V1Q8N148 313 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 NOXO1Q8NFA2 376 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 OR6K6Q8NGW6 343 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 ABHD3Q8WU67 409 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms