RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 DCDC5Q6ZRR9 648 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 RAB43Q86YS6 212 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 GTPBP8Q8N3Z3 284 aaPredicted RBP12.76□□□□□ -0.37
LIG3-205ENST00000585941 NLGN4YQ8NFZ3 816 aaPredicted RBP12.76□□□□□ -0.37
LIG3-205ENST00000585941 RPS4Y2Q8TD47 263 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 ASB10Q8WXI3 467 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 ASB17Q8WXJ9 295 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 DNAJA3Q96EY1 480 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 TMEM41AQ96HV5 264 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 DCLRE1CQ96SD1 692 aaKnown RBP12.76□□□□□ -0.37
LIG3-205ENST00000585941 TBCCD1Q9NVR7 557 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 P4HTMQ9NXG6 502 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 TRAPPC4Q9Y296 219 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 RPH3AQ9Y2J0 694 aaPredicted RBP12.76□□□□□ -0.37
LIG3-205ENST00000585941 HRH3Q9Y5N1 445 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 CACNA1HO95180 2353 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 IGLV1-36A0A0B4J1U3 117 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 H3BML4 177 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 EFNA2O43921 213 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 SLC16A7O60669 478 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 CCL3P10147 92 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 HSF1Q00613 529 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 GLO1Q04760 184 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 ZNF239Q16600 458 aaKnown RBP12.75□□□□□ -0.37
LIG3-205ENST00000585941 TRIM16LQ309B1 348 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 ACSM3Q53FZ2 586 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 HES3Q5TGS1 186 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 RPTNQ6XPR3 784 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 SLC35D2Q76EJ3 337 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 CEACAM19Q7Z692 300 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 CENPSQ8N2Z9 138 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 OR1J4Q8NGS1 313 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 OR6N2Q8NGY6 317 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 KCTD12Q96CX2 325 aaKnown RBP12.75□□□□□ -0.37
LIG3-205ENST00000585941 ACOXLQ9NUZ1 547 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 QPCTLQ9NXS2 382 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 DAPK2Q9UIK4 370 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 ZNF318Q5VUA4 2279 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 SPEGQ15772 3267 aa12.75□□□□□ -0.37
LIG3-205ENST00000585941 ARPC4-TTLL3A0A0A6YYG9 625 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 TRAV1-2A0A0B4J238 106 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 PMS2P1A4D2B8 440 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 PCNX2A6NKB5 2137 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 CBR3O75828 277 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 OCM2P0CE71 109 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 OCMP0CE72 109 aaPredicted RBP12.74□□□□□ -0.37
LIG3-205ENST00000585941 LIFP15018 202 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 IFNGR1P15260 489 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 ZNF17P17021 662 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 ALOX5APP20292 161 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 DPP4P27487 766 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 TRIP6Q15654 476 aaKnown RBP12.74□□□□□ -0.37
LIG3-205ENST00000585941 GLYR1Q49A26 553 aaPredicted RBP12.74□□□□□ -0.37
LIG3-205ENST00000585941 TIGD3Q6B0B8 471 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 LYPD4Q6UWN0 246 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 DHRS13Q6UX07 377 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 ZNF454Q8N9F8 522 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 OTOSQ8NHW6 89 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 IP6K3Q96PC2 410 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 MFRPQ9BY79 579 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 FOXJ2Q9P0K8 574 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 ADAM30Q9UKF2 790 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 GRIP1Q9Y3R0 1128 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 KNTC1P50748 2209 aa12.74□□□□□ -0.37
LIG3-205ENST00000585941 LOC102725191A0A1B0GVB3 256 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 TVP23AA6NH52 213 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 SHISA8B8ZZ34 492 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 AKR7A3O95154 331 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 HLA-DQA2P01906 255 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 P04436 131 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 IL11P20809 199 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 DLSTP36957 453 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 SLC35A1P78382 337 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 POU3F1Q03052 451 aaPredicted RBP12.73□□□□□ -0.37
LIG3-205ENST00000585941 OXA1LQ15070 435 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 INPP5JQ15735 1006 aaPredicted RBP12.73□□□□□ -0.37
LIG3-205ENST00000585941 YIF1BQ5BJH7 314 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 ZMAT1Q5H9K5 638 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 PIP4P1Q86T03 277 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 LAX1Q8IWV1 398 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 YIPF7Q8N8F6 280 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 KIAA1143Q96AT1 154 aaPredicted RBP12.73□□□□□ -0.37
LIG3-205ENST00000585941 KCNK17Q96T54 332 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 TTYH2Q9BSA4 534 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 TTTY10Q9BZA0 68 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 ABCB9Q9NP78 766 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 FAIMQ9NVQ4 179 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 ZNF281Q9Y2X9 895 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 A0A1W2PNU3 283 aaPredicted RBP12.73□□□□□ -0.37
LIG3-205ENST00000585941 ZNF879B4DU55 563 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 PMS2P2O95744 297 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 HLA-DOBP13765 273 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 PTBP1P26599 531 aaKnown RBP eCLIP12.73□□□□□ -0.37
LIG3-205ENST00000585941 OR2B6P58173 313 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 DEFA1P59665 94 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 DEFA3P59666 94 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 IFITM3Q01628 133 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 Q0VFX4 171 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 ATP1A4Q13733 1029 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 INSL4Q14641 139 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms