RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 TCP11X1B4DZS4 312 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 ERVV-1B6SEH8 477 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 SGK1O00141 431 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 CDC7O00311 574 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 RNF13O43567 381 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 TRAF3IP2O43734 574 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 EEDO75530 441 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 SMIM10L1P0DMW3 83 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 IGHV3-43DP0DP04 118 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF24P17028 368 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 OTX1P32242 354 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 SSR4P51571 173 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 CCR8P51685 355 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 GPX6P59796 221 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 BEX3Q00994 111 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF92Q03936 586 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 SMARCB1Q12824 385 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 CUL2Q13617 745 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 PRPSAP1Q14558 356 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 SGCAQ16586 387 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 C6orf120Q7Z4R8 191 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 MKXQ8IYA7 352 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 TTC5Q8N0Z6 440 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 PUSL1Q8N0Z8 303 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 PDIK1LQ8N165 341 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 OR51G1Q8NGK1 321 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 DTX3LQ8TDB6 740 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 ACER1Q8TDN7 264 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 CXorf40AQ8TE69 158 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 RNF138Q8WVD3 245 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 RDH5Q92781 318 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 MCUR1Q96AQ8 359 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 SMIM10Q96HG1 83 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 FAM192AQ9GZU8 254 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 VPS37BQ9H9H4 285 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 CTPS2Q9NRF8 586 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 RAB20Q9NX57 234 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 SLC25A37Q9NYZ2 338 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 CACNG2Q9Y698 323 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 USP47Q96K76 1375 aa2.49□□□□□ -2.01
SMCHD1-209ENST00000583441 A0A075B6Q4 140 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 A0A0G2JLM5 398 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 TRBV11-1A0A0K0K1C0 115 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 TNFSF13O75888 250 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 MOSP00540 346 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ZDHHC11BP0C7U3 371 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ADRB3P13945 408 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 RCC1P18754 421 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 MDKP21741 143 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 AK4P27144 223 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 HNRNPH3P31942 346 aaKnown RBP2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 CCNHP51946 323 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF133P52736 654 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 CDH6P55285 790 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 YWHAGP61981 247 aaKnown RBP eCLIP2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ENPEPQ07075 957 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 UNC119Q13432 240 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 FZD2Q14332 565 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 RCN1Q15293 331 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ZBED5Q49AG3 693 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF658BQ4V348 819 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 HSP90AB3PQ58FF7 597 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 SPANXN2Q5MJ10 180 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 VAX1Q5SQQ9 334 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 CYB5R2Q6BCY4 276 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 CERS6Q6ZMG9 384 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 TMEM179Q6ZVK1 233 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF429Q86V71 674 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 LIX1Q8N485 282 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 MS4A15Q8N5U1 240 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 EID2Q8N6I1 236 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 SLC22A8Q8TCC7 542 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ELMO1Q92556 727 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 SGK3Q96BR1 496 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 CCDC126Q96EE4 140 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 PIK3IP1Q96FE7 263 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 AURKBQ96GD4 344 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF799Q96GE5 643 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 CHP1Q99653 195 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 RARRES2Q99969 163 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 CLMPQ9H6B4 373 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 NEK6Q9HC98 313 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ABCB10Q9NRK6 738 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 INPP5EQ9NRR6 644 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 PCYOX1Q9UHG3 505 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 ATRXP46100 2492 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 MSH6P52701 1360 aa2.48□□□□□ -2.01
SMCHD1-209ENST00000583441 A6NDX4 124 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF726A6NNF4 738 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 LRRIQ3A6PVS8 624 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 LAD1O00515 517 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 MRPS12O15235 138 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 CA11O75493 328 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 FTH1P02794 183 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 CT62P0C5K7 136 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 CALM1P0DP23 149 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 CALM2P0DP24 149 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 CALM3P0DP25 149 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 EIF2S2P20042 333 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 CCNCP24863 283 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms