RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 PRSS50Q9UI38 385 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 FOXD3Q9UJU5 478 aaPredicted RBP15.1■□□□□ 0.01
NUP88-210ENST00000574867 TEX13CA0A0J9YWL9 993 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 SOCS2O14508 198 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 PGA4P0DJD7 388 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 PGA3P0DJD8 388 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 NOS3P29474 1203 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 CSNK1A1P48729 337 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 RAD23AP54725 363 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 CLRN1P58418 232 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 KRR1Q13601 381 aaKnown RBP15.1■□□□□ 0.01
NUP88-210ENST00000574867 TSPO2Q5TGU0 170 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 SLC27A4Q6P1M0 643 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 C20orf196Q8IYI0 205 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 GPR137CQ8N3F9 429 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 LNX2Q8N448 690 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 FNDC8Q8TC99 324 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 Q96M85 177 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 ALG12Q9BV10 488 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 SLC7A10Q9NS82 523 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 ASB6Q9NWX5 421 aa15.1■□□□□ 0.01
NUP88-210ENST00000574867 NKX1-2Q9UD57 310 aaPredicted RBP15.1■□□□□ 0.01
NUP88-210ENST00000574867 KRT33AO76009 404 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 IGFBP1P08833 259 aaPredicted RBP15.09■□□□□ 0.01
NUP88-210ENST00000574867 POU1F1P28069 291 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 PEX2P28328 305 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 CRISP1P54107 249 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 MESTQ5EB52 335 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 CARD17Q5XLA6 110 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 PACRGLQ8N7B6 248 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 OR6N1Q8NGY5 312 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 KCNK17Q96T54 332 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 TEX12Q9BXU0 123 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 GABARAPL3Q9BY60 117 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 MRPL13Q9BYD1 178 aaKnown RBP15.09■□□□□ 0.01
NUP88-210ENST00000574867 ELOVL5Q9NYP7 299 aa15.09■□□□□ 0.01
NUP88-210ENST00000574867 ZNF587BE7ETH6 402 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 AHCYL1O43865 530 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 MITFO75030 526 aaPredicted RBP15.08■□□□□ 0.01
NUP88-210ENST00000574867 TRMUO75648 421 aaKnown RBP15.08■□□□□ 0.01
NUP88-210ENST00000574867 IGHV3-9P01782 118 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 PCYT1AP49585 367 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 ITGADQ13349 1161 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 P2RY6Q15077 328 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 PGGHGQ32M88 737 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 OGFRL1Q5TC84 451 aaPredicted RBP15.08■□□□□ 0.01
NUP88-210ENST00000574867 ZNF474Q6S9Z5 364 aaPredicted RBP15.08■□□□□ 0.01
NUP88-210ENST00000574867 GABRG1Q8N1C3 465 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 TMEM54Q969K7 222 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 RASD2Q96D21 266 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 ALKBH3Q96Q83 286 aaPredicted RBP15.08■□□□□ 0.01
NUP88-210ENST00000574867 RBM24Q9BX46 236 aaKnown RBP15.08■□□□□ 0.01
NUP88-210ENST00000574867 SLC25A19Q9HC21 320 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 GLTPQ9NZD2 209 aa15.08■□□□□ 0.01
NUP88-210ENST00000574867 FLNCQ14315 2725 aa15.08■□□□□ 0
NUP88-210ENST00000574867 DOPEY1Q5JWR5 2465 aa15.08■□□□□ 0
NUP88-210ENST00000574867 UPK3AO75631 287 aa15.08■□□□□ 0
NUP88-210ENST00000574867 ATP6V1G2O95670 118 aa15.08■□□□□ 0
NUP88-210ENST00000574867 GRK5P34947 590 aa15.08■□□□□ 0
NUP88-210ENST00000574867 RUNX1T1Q06455 604 aa15.08■□□□□ 0
NUP88-210ENST00000574867 CDSNQ15517 529 aa15.08■□□□□ 0
NUP88-210ENST00000574867 HIST3H3Q16695 136 aa15.08■□□□□ 0
NUP88-210ENST00000574867 LPCAT4Q643R3 524 aa15.08■□□□□ 0
NUP88-210ENST00000574867 JAZF1Q86VZ6 243 aa15.08■□□□□ 0
NUP88-210ENST00000574867 WDFY1Q8IWB7 410 aa15.08■□□□□ 0
NUP88-210ENST00000574867 OR4Q3Q8NH05 313 aa15.08■□□□□ 0
NUP88-210ENST00000574867 HDAC2Q92769 488 aaKnown RBP15.08■□□□□ 0
NUP88-210ENST00000574867 RDH12Q96NR8 316 aa15.08■□□□□ 0
NUP88-210ENST00000574867 SNX18Q96RF0 628 aa15.08■□□□□ 0
NUP88-210ENST00000574867 SLC29A1Q99808 456 aa15.08■□□□□ 0
NUP88-210ENST00000574867 ULBP2Q9BZM5 246 aa15.08■□□□□ 0
NUP88-210ENST00000574867 VCXQ9H320 206 aa15.08■□□□□ 0
NUP88-210ENST00000574867 FREM1Q5H8C1 2179 aa15.08■□□□□ 0
NUP88-210ENST00000574867 NKX2-6A6NCS4 301 aa15.07■□□□□ 0
NUP88-210ENST00000574867 RPL36A-HNRNPH2H7BZ11 118 aa15.07■□□□□ 0
NUP88-210ENST00000574867 ARHGEF9O43307 516 aa15.07■□□□□ 0
NUP88-210ENST00000574867 COX5AP20674 150 aa15.07■□□□□ 0
NUP88-210ENST00000574867 GIPRP48546 466 aa15.07■□□□□ 0
NUP88-210ENST00000574867 CDK5Q00535 292 aa15.07■□□□□ 0
NUP88-210ENST00000574867 MYBPC1Q00872 1141 aa15.07■□□□□ 0
NUP88-210ENST00000574867 FAPQ12884 760 aa15.07■□□□□ 0
NUP88-210ENST00000574867 STK11Q15831 433 aa15.07■□□□□ 0
NUP88-210ENST00000574867 PRRG3Q9BZD7 231 aa15.07■□□□□ 0
NUP88-210ENST00000574867 GALNT8Q9NY28 637 aa15.07■□□□□ 0
NUP88-210ENST00000574867 PRSS37A4D1T9 235 aa15.07■□□□□ 0
NUP88-210ENST00000574867 M0R3G1 203 aa15.07■□□□□ 0
NUP88-210ENST00000574867 CD79BP40259 229 aa15.07■□□□□ 0
NUP88-210ENST00000574867 CD47Q08722 323 aa15.07■□□□□ 0
NUP88-210ENST00000574867 NPRL3Q12980 569 aa15.07■□□□□ 0
NUP88-210ENST00000574867 GINS1Q14691 196 aa15.07■□□□□ 0
NUP88-210ENST00000574867 LRRC36Q1X8D7 754 aa15.07■□□□□ 0
NUP88-210ENST00000574867 RNASE6Q93091 150 aaKnown RBP15.07■□□□□ 0
NUP88-210ENST00000574867 RIBC2Q9H4K1 309 aa15.07■□□□□ 0
NUP88-210ENST00000574867 TAS2R16Q9NYV7 291 aa15.07■□□□□ 0
NUP88-210ENST00000574867 KLHL21Q9UJP4 597 aa15.07■□□□□ 0
NUP88-210ENST00000574867 USP9XQ93008 2570 aaPredicted RBP15.07■□□□□ 0
NUP88-210ENST00000574867 CACNA1CQ13936 2221 aa15.06■□□□□ 0
NUP88-210ENST00000574867 IFNGP01579 166 aa15.06■□□□□ 0
NUP88-210ENST00000574867 HMGN1P05114 100 aa15.06■□□□□ 0
NUP88-210ENST00000574867 RNF224P0DH78 156 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms