RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 FOXC2Q99958 501 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 SULT4A1Q9BR01 284 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 GABARAPL3Q9BY60 117 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 RAB34Q9BZG1 259 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 GBA3Q9H227 469 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 YY1AP1Q9H869 796 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 SLC35D1Q9NTN3 355 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 SMOXQ9NWM0 555 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 GIN1Q9NXP7 522 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 TMOD2Q9NZR1 351 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 PIPOXQ9P0Z9 390 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 PTBP2Q9UKA9 531 aaKnown RBP1.3□□□□□ -2.2
VPS35-207ENST00000568191 TMCO1Q9UM00 188 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 NLRC5Q86WI3 1866 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 YEATS2Q9ULM3 1422 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 ADGRL1O94910 1474 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 ANKRD12Q6UB98 2062 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 A0A1B0GWJ7 208 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 A8MXQ7 604 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 ARPC3O15145 178 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 PRKAB2O43741 272 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 MFN2O95140 757 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 LINC00869P0C866 280 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 IL12AP29459 219 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 CHI3L1P36222 383 aaPredicted RBP1.29□□□□□ -2.2
VPS35-207ENST00000568191 ERVK-25P63136 954 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 SLC7A9P82251 487 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 CDK16Q00536 496 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 ERCC8Q13216 396 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 OR5I1Q13606 314 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 PIGHQ14442 188 aaPredicted RBP1.29□□□□□ -2.2
VPS35-207ENST00000568191 MESDQ14696 234 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 PHYHD1Q5SRE7 291 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 PDZK1Q5T2W1 519 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 DHDDSQ86SQ9 333 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 BIVMQ86UB2 503 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 TRIM69Q86WT6 500 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 PLA2G4DQ86XP0 818 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 VSTM4Q8IW00 320 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 ZNF683Q8IZ20 524 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 SYT14Q8NB59 555 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 TRMT10AQ8TBZ6 339 aaKnown RBP1.29□□□□□ -2.2
VPS35-207ENST00000568191 UBE2E3Q969T4 207 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 SGK3Q96BR1 496 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 MED8Q96G25 268 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 TTC25Q96NG3 672 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 CHAC1Q9BUX1 264 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 TPPP3Q9BW30 176 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 C12orf10Q9HB07 376 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 POLE4Q9NR33 117 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 POLE3Q9NRF9 147 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 GPATCH2LQ9NWQ4 482 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 RNF14Q9UBS8 474 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 CEMIPQ8WUJ3 1361 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 TNS2Q63HR2 1409 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 ITGB4P16144 1822 aa1.29□□□□□ -2.2
VPS35-207ENST00000568191 IGLV1-50A0A075B6I6 118 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 A0A1B0GVI7 797 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 K7EQM0 130 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 MED7O43513 233 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 TOM1O60784 492 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 HSPA5P11021 654 aaKnown RBP1.28□□□□□ -2.2
VPS35-207ENST00000568191 CCDC130P13994 396 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 NPBWR2P48146 333 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 RFX3P48380 749 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 ATP1B3P54709 279 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 RPS21P63220 83 aaKnown RBP1.28□□□□□ -2.2
VPS35-207ENST00000568191 PITPNAQ00169 270 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 SYCNQ0VAF6 134 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 SLC39A6Q13433 755 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 AQP6Q13520 282 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 GINS1Q14691 196 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 IGFBP7Q16270 282 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 ZNF684Q5T5D7 378 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 HES5Q5TA89 166 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 OR4F3Q6IEY1 312 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 UTS2BQ765I0 119 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 ZSCAN30Q86W11 494 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 RIMKLAQ8IXN7 391 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 PUSL1Q8N0Z8 303 aaKnown RBP1.28□□□□□ -2.2
VPS35-207ENST00000568191 MREGQ8N565 214 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 VN1R2Q8NFZ6 395 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 MAIP1Q8WWC4 291 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 GEMIN6Q8WXD5 167 aaKnown RBP1.28□□□□□ -2.2
VPS35-207ENST00000568191 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.28□□□□□ -2.2
VPS35-207ENST00000568191 EFHD2Q96C19 240 aaPredicted RBP1.28□□□□□ -2.2
VPS35-207ENST00000568191 L3HYPDHQ96EM0 354 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 TSSK3Q96PN8 268 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 CLCC1Q96S66 551 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 ZNF607Q96SK3 696 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 FAIM2Q9BWQ8 316 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 NHEJ1Q9H9Q4 299 aaPredicted RBP1.28□□□□□ -2.2
VPS35-207ENST00000568191 MRPL47Q9HD33 250 aaKnown RBP1.28□□□□□ -2.2
VPS35-207ENST00000568191 ADAP2Q9NPF8 381 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 FARSBQ9NSD9 589 aaKnown RBP1.28□□□□□ -2.2
VPS35-207ENST00000568191 EXD2Q9NVH0 621 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 CTNNA3Q9UI47 895 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 RPH3ALQ9UNE2 315 aa1.28□□□□□ -2.2
VPS35-207ENST00000568191 WDR62O43379 1518 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 PTPRTO14522 1441 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms