RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 YAE1D1Q9NRH1 226 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 AP3M1Q9Y2T2 418 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 FKBP7Q9Y680 259 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 HIVEP2P31629 2446 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 GPRIN2O60269 458 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 OR7A10O76100 309 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 F13BP05160 661 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 SLC25A16P16260 332 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 NPR2P20594 1047 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 PTDSS1P48651 473 aaKnown RBP17.96■□□□□ 0.47
CLN3-219ENST00000565778 UGT2B15P54855 530 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 DAG1Q14118 895 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 LZICQ8WZA0 190 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 SORCS2Q96PQ0 1159 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 CMTM6Q9NX76 183 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 MED31Q9Y3C7 131 aa17.96■□□□□ 0.47
CLN3-219ENST00000565778 FN1P02751 2386 aaKnown RBP17.96■□□□□ 0.47
CLN3-219ENST00000565778 NSD1Q96L73 2696 aaPredicted RBP17.95■□□□□ 0.46
CLN3-219ENST00000565778 A0A1W2PRG6 482 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 SH3PXD2BA1X283 911 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 CD5LO43866 347 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 QDPRP09417 244 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 CSF3P09919 207 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 THRBP10828 461 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 IFNA8P32881 189 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 PDLIM4P50479 330 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 EFNB3Q15768 340 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 KRT80Q6KB66 452 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 LRFN4Q6PJG9 635 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 SPATA21Q7Z572 469 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 ARPINQ7Z6K5 226 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 SKA3Q8IX90 412 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 SLC15A3Q8IY34 581 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 ANKS4BQ8N8V4 417 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 C10orf105Q8TEF2 133 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 MS4A3Q96HJ5 214 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 TNFRSF13CQ96RJ3 184 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 PLK3Q9H4B4 646 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 DENND2DQ9H6A0 471 aaPredicted RBP17.95■□□□□ 0.46
CLN3-219ENST00000565778 ZNF442Q9H7R0 627 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 EFCAB1Q9HAE3 211 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 NOX3Q9HBY0 568 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 SPEF1Q9Y4P9 236 aa17.95■□□□□ 0.46
CLN3-219ENST00000565778 MCIDASD6RGH6 385 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 hCG_2039718K7EN88 272 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 GSTA4O15217 222 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 DHHO43323 396 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 TLX2O43763 284 aaPredicted RBP17.94■□□□□ 0.46
CLN3-219ENST00000565778 ENTPD5O75356 428 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 UBL3O95164 117 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 RAB36O95755 333 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 AQP2P41181 271 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 GIPRP48546 466 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 CLRN1P58418 232 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 LIPEQ05469 1076 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 RPL18Q07020 188 aaKnown RBP17.94■□□□□ 0.46
CLN3-219ENST00000565778 LOXL1Q08397 574 aaPredicted RBP17.94■□□□□ 0.46
CLN3-219ENST00000565778 ST3GAL3Q11203 375 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 SNTB2Q13425 540 aaKnown RBP17.94■□□□□ 0.46
CLN3-219ENST00000565778 LAPTM4AQ15012 233 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 CARTPTQ16568 116 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 SLC22A24Q8N4F4 322 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 HOPXQ9BPY8 73 aaPredicted RBP17.94■□□□□ 0.46
CLN3-219ENST00000565778 RAB1BQ9H0U4 201 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 INIPQ9NRY2 104 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 C20orf141Q9NUB4 165 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 GMPR2Q9P2T1 348 aaKnown RBP17.94■□□□□ 0.46
CLN3-219ENST00000565778 FBXO9Q9UK97 447 aaPredicted RBP17.94■□□□□ 0.46
CLN3-219ENST00000565778 CMAHPQ9Y471 501 aa17.94■□□□□ 0.46
CLN3-219ENST00000565778 CRLF1O75462 422 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 IGF2P01344 180 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 IGHG1P01857 330 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 PATE4P0C8F1 98 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 PGA4P0DJD7 388 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 PGA3P0DJD8 388 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 OR8G3PP0DMU2 310 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 ZNF14P17017 642 aaPredicted RBP17.93■□□□□ 0.46
CLN3-219ENST00000565778 NR4A1P22736 598 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 YAP1P46937 504 aaKnown RBP17.93■□□□□ 0.46
CLN3-219ENST00000565778 PRIMA1Q86XR5 153 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 SVOPLQ8N434 492 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 ZNF75AQ96N20 296 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 DOK1Q99704 481 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 SH3GL3Q99963 347 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 ELAC2Q9BQ52 826 aaKnown RBP17.93■□□□□ 0.46
CLN3-219ENST00000565778 RNF121Q9H920 327 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 ZNF224Q9NZL3 707 aa17.93■□□□□ 0.46
CLN3-219ENST00000565778 A0A096LNT2 108 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 FARS2O95363 451 aaKnown RBP17.92■□□□□ 0.46
CLN3-219ENST00000565778 ZNF682O95780 498 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 ERCC1P07992 297 aaPredicted RBP17.92■□□□□ 0.46
CLN3-219ENST00000565778 USF1P22415 310 aaPredicted RBP17.92■□□□□ 0.46
CLN3-219ENST00000565778 PPOXP50336 477 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 MYBPC1Q00872 1141 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 RUNX1T1Q06455 604 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 RAB39AQ14964 217 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 TMEM249Q2WGJ8 235 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 GKAP1Q5VSY0 366 aaPredicted RBP17.92■□□□□ 0.46
CLN3-219ENST00000565778 SYT14Q8NB59 555 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 MOSPD2Q8NHP6 518 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms