RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 NOP53Q9NZM5 478 aaKnown RBP6.2□□□□□ -1.42
VPS4A-203ENST00000564399 PRDM4Q9UKN5 801 aa6.2□□□□□ -1.42
VPS4A-203ENST00000564399 PYCARDQ9ULZ3 195 aa6.2□□□□□ -1.42
VPS4A-203ENST00000564399 SOX21Q9Y651 276 aaPredicted RBP6.2□□□□□ -1.42
VPS4A-203ENST00000564399 MDFIC2A0A1B0GVS7 189 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 PLSCR5A0PG75 271 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 CLPSL1A2RUU4 121 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 TRAPPC2LH3BP13 241 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 RIPK2O43353 540 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 HOXA3O43365 443 aaPredicted RBP6.19□□□□□ -1.42
VPS4A-203ENST00000564399 NPHS1O60500 1241 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 SERPINI2O75830 405 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 IGHMP01871 453 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 C1QCP02747 245 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 IGHV4-38-2P0DP08 117 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 ZNF12P17014 697 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 ECHS1P30084 290 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 ARRB2P32121 409 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 EMX2Q04743 252 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 EGR4Q05215 589 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 PCLAFQ15004 111 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 LARS2Q15031 903 aaKnown RBP6.19□□□□□ -1.42
VPS4A-203ENST00000564399 TAF9Q16594 264 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 TBC1D28Q2M2D7 210 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 FAM69AQ5T7M9 428 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 ASPHD2Q6ICH7 369 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 FIP1L1Q6UN15 594 aaKnown RBP6.19□□□□□ -1.42
VPS4A-203ENST00000564399 ZNF627Q7L945 461 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 ZNF584Q8IVC4 421 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 SKA3Q8IX90 412 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 PARP8Q8N3A8 854 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 CLIP4Q8N3C7 705 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 KLHL36Q8N4N3 616 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 PAQR4Q8N4S7 273 aaPredicted RBP6.19□□□□□ -1.42
VPS4A-203ENST00000564399 OR1J2Q8NGS2 313 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 FGFBP3Q8TAT2 258 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 FAM110DQ8TAY7 271 aaPredicted RBP6.19□□□□□ -1.42
VPS4A-203ENST00000564399 SLC38A4Q969I6 547 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 TAAR8Q969N4 342 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 TXNDC15Q96J42 360 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 LRR1Q96L50 414 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 DIRC2Q96SL1 478 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 SLC30A2Q9BRI3 323 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 MECRQ9BV79 373 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 BCL2L14Q9BZR8 327 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 EGLN1Q9GZT9 426 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 LRMDAQ9H2I8 198 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 ARMC7Q9H6L4 198 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 CACYBPQ9HB71 228 aaKnown RBP6.19□□□□□ -1.42
VPS4A-203ENST00000564399 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.19□□□□□ -1.42
VPS4A-203ENST00000564399 RPS6KB2Q9UBS0 482 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 OR5V1Q9UGF6 321 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 EGFL7Q9UHF1 273 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 ZNF232Q9UNY5 417 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 INSIG2Q9Y5U4 225 aa6.19□□□□□ -1.42
VPS4A-203ENST00000564399 TRAV40A0A0B4J280 105 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 LOC102725191A0A1B0GVB3 256 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 SLC22A31A6NKX4 558 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 SMIM23A6NLE4 172 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 MS4A18H0YCH9 400 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 PIN1P1O15428 100 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 ZNF500O60304 480 aaPredicted RBP6.18□□□□□ -1.42
VPS4A-203ENST00000564399 ENTPD5O75356 428 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 UBOX5O94941 541 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 FARS2O95363 451 aaKnown RBP6.18□□□□□ -1.42
VPS4A-203ENST00000564399 TSPAN15O95858 294 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 HPRP00739 348 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 NGFP01138 241 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 PTHP01270 115 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 IGHV1-46P01743 117 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 HLA-DOBP13765 273 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 KRT4P19013 534 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 ALDH3A1P30838 453 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 S100A3P33764 101 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 CSNK1A1P48729 337 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 UCP2P55851 309 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 TXNL4AP83876 142 aaKnown RBP6.18□□□□□ -1.42
VPS4A-203ENST00000564399 HOXC5Q00444 222 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 PLP2Q04941 152 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 PMS2P3Q13401 168 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 HLXQ14774 488 aaPredicted RBP6.18□□□□□ -1.42
VPS4A-203ENST00000564399 CASP8Q14790 479 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 MS4A18Q3C1V0 323 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 ESCO2Q56NI9 601 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 FAM209AQ5JX71 171 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 TMEM53Q6P2H8 277 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 ZNF621Q6ZSS3 439 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 PIWIL3Q7Z3Z3 882 aaKnown RBP6.18□□□□□ -1.42
VPS4A-203ENST00000564399 NET1Q7Z628 596 aaPredicted RBP6.18□□□□□ -1.42
VPS4A-203ENST00000564399 SERPINA11Q86U17 422 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 LRRC34Q8IZ02 419 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 C4orf33Q8N1A6 199 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 SPICQ8N5J4 248 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 TRIML2Q8N7C3 387 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 NOA1Q8NC60 698 aaKnown RBP6.18□□□□□ -1.42
VPS4A-203ENST00000564399 OR1J1Q8NGS3 322 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 PPP1R36Q96LQ0 422 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 PANX1Q96RD7 426 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 SH3GL3Q99963 347 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 C1orf198Q9H425 327 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms