RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PGGHGQ32M88 737 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 PAQR6Q6TCH4 344 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 SLC46A3Q7Z3Q1 461 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 PXKQ7Z7A4 578 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 GPAT4Q86UL3 456 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 ZNF786Q8N393 782 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 LNX2Q8N448 690 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 ADPRHL1Q8NDY3 354 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 ZNF417Q8TAU3 575 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 LINC01560Q8TB33 94 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 ARL5BQ96KC2 179 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 ZNF587Q96SQ5 575 aaPredicted RBP10.49□□□□□ -0.73
LDLR-212ENST00000560467 PTDSS2Q9BVG9 487 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 MYRFQ9Y2G1 1151 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 TPRKBQ9Y3C4 175 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 IER3IP1Q9Y5U9 82 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 NINQ8N4C6 2090 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 A0A1W2PNR3 127 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 IRGMA1A4Y4 181 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 SH3D21A4FU49 640 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 TUBAL3A6NHL2 446 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 LRRN3E7EW58 273 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 C11orf98E9PRG8 122 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 TNFSF11O14788 317 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 ARPC3O15145 178 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 TLX2O43763 284 aaPredicted RBP10.48□□□□□ -0.73
LDLR-212ENST00000560467 EFNA2O43921 213 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 AKR7A3O95154 331 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 TNFAIP8O95379 198 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 PPP1R3DO95685 299 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 BCL10O95999 233 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 RENP00797 406 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 ZNF43P17038 809 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 IL11P20809 199 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 EEF1B2P24534 225 aaKnown RBP10.48□□□□□ -0.73
LDLR-212ENST00000560467 ATP6V1E1P36543 226 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 CHN2P52757 468 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 CLDN15P56746 228 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 B3GALT5-AS1P59052 145 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 SNRPGP62308 76 aaKnown RBP10.48□□□□□ -0.73
LDLR-212ENST00000560467 RPS4XP62701 263 aaKnown RBP10.48□□□□□ -0.73
LDLR-212ENST00000560467 SRYQ05066 204 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 RPL18Q07020 188 aaKnown RBP10.48□□□□□ -0.73
LDLR-212ENST00000560467 LGALS3BPQ08380 585 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 ZP4Q12836 540 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 POU4F3Q15319 338 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 RBM48Q5RL73 367 aaKnown RBP10.48□□□□□ -0.73
LDLR-212ENST00000560467 TMEM236Q5W0B7 351 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 C12orf73Q69YU5 71 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 USP51Q70EK9 711 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 KIF18BQ86Y91 864 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 ZNF524Q96C55 264 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 DNAJA3Q96EY1 480 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 LRRC46Q96FV0 321 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 C18orf12Q96KH6 178 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 OXGR1Q96P68 337 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 KATNB1Q9BVA0 655 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 PLEKHF2Q9H8W4 249 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 IL20RAQ9UHF4 553 aa10.48□□□□□ -0.73
LDLR-212ENST00000560467 A0A1W2PPR1 153 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 CLCA1A8K7I4 914 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 B4DXG7 233 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 EEF1E1-BLOC1S5C9J1V9 151 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 FTCDNL1E5RQL4 147 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 PRR23D1E9PI22 279 aaPredicted RBP10.47□□□□□ -0.73
LDLR-212ENST00000560467 EEF1E1O43324 174 aaKnown RBP10.47□□□□□ -0.73
LDLR-212ENST00000560467 SERPINI2O75830 405 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 CLIC3O95833 236 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 F13BP05160 661 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 IGFBP1P08833 259 aaPredicted RBP10.47□□□□□ -0.73
LDLR-212ENST00000560467 GNAO1P09471 354 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 INHBBP09529 407 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 PRR23D2P0DMB1 279 aaPredicted RBP10.47□□□□□ -0.73
LDLR-212ENST00000560467 EPXP11678 715 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 IMPDH2P12268 514 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 FCGR2AP12318 317 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 CPN1P15169 458 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 EPHA2P29317 976 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 SDHAP31040 664 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 HOXC12P31275 282 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 STARP49675 285 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 ERVK-25P63136 954 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 TEKQ02763 1124 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 SLC35F1Q5T1Q4 408 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 VASNQ6EMK4 673 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 CLEC9AQ6UXN8 241 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 ADCK1Q86TW2 530 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 GID4Q8IVV7 300 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 IQCF1Q8N6M8 205 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 TCEANCQ8N8B7 351 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 RHOXF1Q8NHV9 184 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 TMEM163Q8TC26 289 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 HDAC2Q92769 488 aaKnown RBP10.47□□□□□ -0.73
LDLR-212ENST00000560467 IL4I1Q96RQ9 567 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 GPX7Q96SL4 187 aaPredicted RBP10.47□□□□□ -0.73
LDLR-212ENST00000560467 MYCBPQ99417 103 aaPredicted RBP10.47□□□□□ -0.73
LDLR-212ENST00000560467 TIMP4Q99727 224 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 NPAS1Q99742 590 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 SF3B5Q9BWJ5 86 aaKnown RBP10.47□□□□□ -0.73
LDLR-212ENST00000560467 PLA2G12AQ9BZM1 189 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms