RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ABCA2Q9BZC7 2435 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 TRBV11-1A0A0K0K1C0 115 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 FAM149AA5PLN7 773 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 TRAPPC13A5PLN9 417 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 NPIPB9F8W1W9 429 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 hCG_2039718K7EN88 272 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 PRYO14603 147 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ZNF264O43296 627 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 MPZL2O60487 215 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 TSPAN2O60636 221 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 KLF7O75840 302 aaPredicted RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 UTS2O95399 124 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 CSTAP01040 98 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 IGF2P01344 180 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ITGB2P05107 769 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 SERPINA7P05543 415 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 NPSP0C0P6 89 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 RFPL3SP0C7P2 107 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 PNMTP11086 282 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 LIPCP11150 499 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ADRA2CP18825 462 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 PGCP20142 388 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 DLSTP36957 453 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ETV5P41161 510 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 RBM34P42696 430 aaKnown RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 OR1E2P47887 323 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 RFX3P48380 749 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 CENPAP49450 140 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ZNF84P51523 738 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 UGT2B15P54855 530 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 CDH12P55289 794 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 EEF1A1P68104 462 aaKnown RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 VLDLRP98155 873 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 FUT5Q11128 374 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 MERTKQ12866 999 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 MEP1AQ16819 746 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 LRRC36Q1X8D7 754 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 KLHL26Q53HC5 615 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 OTUD3Q5T2D3 398 aaPredicted RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 CCNJQ5T5M9 372 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 MRPL2Q5T653 305 aaKnown RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 RPL13AP3Q6NVV1 102 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 FAM199XQ6PEV8 388 aaPredicted RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 ULK3Q6PHR2 472 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 C5orf46Q6UWT4 87 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 DEF8Q6ZN54 512 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 PLEKHM3Q6ZWE6 761 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 RPS19BP1Q86WX3 136 aaKnown RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 VRK2Q86Y07 508 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 OFCC1Q8IZS5 231 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 PAQR4Q8N4S7 273 aaPredicted RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 ZNF614Q8N883 585 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ZNF441Q8N8Z8 693 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 EXD3Q8N9H8 876 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 APCDD1LQ8NCL9 501 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ZNF540Q8NDQ6 660 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 GPR32P1Q8NGA4 272 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 OR10G2Q8NGC3 310 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 OR52N4Q8NGI2 321 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 VANGL1Q8TAA9 524 aaPredicted RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 GNPDA2Q8TDQ7 276 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ELP5Q8TE02 316 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 CT55Q8WUE5 264 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 FAR1Q8WVX9 515 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ACOT11Q8WXI4 607 aaPredicted RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 TMEM234Q8WY98 164 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 FAM168AQ92567 244 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 OMA1Q96E52 524 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 IMMP1LQ96LU5 166 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ADAD1Q96M93 576 aaKnown RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 INTS14Q96SY0 518 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 APOL4Q9BPW4 351 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 NXF5Q9H1B4 397 aaKnown RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 SLCO5A1Q9H2Y9 848 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ANKRA2Q9H9E1 313 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 GPN2Q9H9Y4 310 aaPredicted RBP4.62□□□□□ -1.67
LDLR-209ENST00000558528 NTN4Q9HB63 628 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 ACER3Q9NUN7 267 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 CNIH4Q9P003 139 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 TESMINQ9Y4I5 508 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 F8P00451 2351 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 PCDH15Q96QU1 1955 aa4.62□□□□□ -1.67
LDLR-209ENST00000558528 CLEC18AA5D8T8 446 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 MAGEA13PA6NCF6 341 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 SNTNA6NMZ2 147 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 EI24O14681 340 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 SMAD9O15198 467 aaKnown RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 CHP2O43745 196 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 OR10H3O60404 316 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 NME6O75414 186 aaPredicted RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 SNX4O95219 450 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 C1QCP02747 245 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 CLPSP04118 112 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ALPLP05186 524 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 UMODP07911 640 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 COX6A1P12074 109 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ANXA7P20073 488 aaKnown RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 IGFBP5P24593 272 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 OTX2P32243 289 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 CAPGP40121 348 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms