RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 SEC14L2O76054 403 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 GOSR1O95249 250 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 PGA4P0DJD7 388 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 PGA3P0DJD8 388 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 DAP3P51398 398 aaKnown RBP12.37□□□□□ -0.43
PTCH1-226ENST00000553011 HMGA2P52926 109 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 TBRG1Q3YBR2 411 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 ANKDD1AQ495B1 522 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 ARMC4Q5T2S8 1044 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 ASRGL1Q7L266 308 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 OR9Q2Q8NGE9 314 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 OR4C15Q8NGM1 316 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 BCL2L2Q92843 193 aaPredicted RBP12.37□□□□□ -0.43
PTCH1-226ENST00000553011 ZNF566Q969W8 418 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 MUCL1Q96DR8 90 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 C1QTNF6Q9BXI9 259 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 TXNIPQ9H3M7 391 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 KRCC1Q9NPI7 259 aaPredicted RBP12.37□□□□□ -0.43
PTCH1-226ENST00000553011 B3GAT2Q9NPZ5 323 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 GLTPQ9NZD2 209 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 NPAP1Q9NZP6 1156 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 ZNF346Q9UL40 294 aaKnown RBP12.37□□□□□ -0.43
PTCH1-226ENST00000553011 U3KQV3 271 aa12.37□□□□□ -0.43
PTCH1-226ENST00000553011 NPIPB13A6NJU9 1138 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 ZNF99A8MXY4 864 aaPredicted RBP12.36□□□□□ -0.43
PTCH1-226ENST00000553011 NPIPB4C9JG80 1138 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 IGHG1P01857 330 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 IGHMP01871 453 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 ACADSP16219 412 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 RPL4P36578 427 aaKnown RBP12.36□□□□□ -0.43
PTCH1-226ENST00000553011 ZNF83P51522 516 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 SH3BGRP55822 239 aaPredicted RBP12.36□□□□□ -0.43
PTCH1-226ENST00000553011 CLRN1P58418 232 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 FXYD6P3P58550 94 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 PRPS1P60891 318 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 RPL27P61353 136 aaKnown RBP12.36□□□□□ -0.43
PTCH1-226ENST00000553011 ERVK-25P63136 954 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 TUBA1BP68363 451 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 TUBA4AP68366 448 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 MYBPC1Q00872 1141 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 PGBD2Q6P3X8 592 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 LRFN4Q6PJG9 635 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 THSD4Q6ZMP0 1018 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 TUBA1AQ71U36 451 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 C17orf78Q8N4C9 275 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 SYT14Q8NB59 555 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 NOXO1Q8NFA2 376 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 HDAC2Q92769 488 aaKnown RBP12.36□□□□□ -0.43
PTCH1-226ENST00000553011 UTP4Q969X6 686 aaKnown RBP12.36□□□□□ -0.43
PTCH1-226ENST00000553011 SLCO4A1Q96BD0 722 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 TSPAN32Q96QS1 320 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 KATNB1Q9BVA0 655 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 MRPL13Q9BYD1 178 aaKnown RBP12.36□□□□□ -0.43
PTCH1-226ENST00000553011 MMADHCQ9H3L0 296 aaPredicted RBP12.36□□□□□ -0.43
PTCH1-226ENST00000553011 LIME1Q9H400 295 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 REEP1Q9H902 201 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.36□□□□□ -0.43
PTCH1-226ENST00000553011 IL20RAQ9UHF4 553 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 ADAM18Q9Y3Q7 739 aa12.36□□□□□ -0.43
PTCH1-226ENST00000553011 SAMHD1Q9Y3Z3 626 aaKnown RBP12.36□□□□□ -0.43
PTCH1-226ENST00000553011 DPRXA6NFQ7 191 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 FKBP6O75344 327 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 CCNB2O95067 398 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 NDUFB2O95178 105 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 PLAUP00749 431 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 CST1P01037 141 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 CD14P08571 375 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 FPR3P25089 353 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 HOXC12P31275 282 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 ACVR1BP36896 505 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 IFNGR2P38484 337 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 GSSP48637 474 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 IST1P53990 364 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 TAF11Q15544 211 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 NCMAPQ5T1S8 102 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 C1orf146Q5VVC0 180 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 C1orf94Q6P1W5 598 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 ANKRD16Q6P6B7 361 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 KLHL24Q6TFL4 600 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 HDDC2Q7Z4H3 204 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 ZNF519Q8TB69 540 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 BOD1Q96IK1 185 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 PLEKHF2Q9H8W4 249 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 NGBQ9NPG2 151 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 POFUT2Q9Y2G5 429 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 AMDHD2Q9Y303 409 aa12.35□□□□□ -0.43
PTCH1-226ENST00000553011 USF3Q68DE3 2245 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 DHHO43323 396 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 QDPRP09417 244 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 B4GALT1P15291 398 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 NR1H2P55055 460 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 BSPH1Q075Z2 132 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 CCNIQ14094 377 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 HIST3H3Q16695 136 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 ZNF770Q6IQ21 691 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-226ENST00000553011 ZNF813Q6ZN06 617 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 TMEM179BQ7Z7N9 219 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 CLDN22Q8N7P3 220 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 PAPD5Q8NDF8 572 aaKnown RBP12.34□□□□□ -0.43
PTCH1-226ENST00000553011 FANK1Q8TC84 345 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms