RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 IGHG1P01857 330 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 PGA4P0DJD7 388 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 PGA3P0DJD8 388 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 APEHP13798 732 aaKnown RBP18.71■□□□□ 0.59
VPS29-206ENST00000549578 ACADSP16219 412 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 EPHA2P29317 976 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 LCN6P62502 163 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 KRR1Q13601 381 aaKnown RBP18.71■□□□□ 0.59
VPS29-206ENST00000549578 SLC35F1Q5T1Q4 408 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 FBXW9Q5XUX1 488 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 GPR139Q6DWJ6 353 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 LINGO2Q7L985 606 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 HDDC2Q7Z4H3 204 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 C20orf196Q8IYI0 205 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 SYT14Q8NB59 555 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 OR2T33Q8NG76 320 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 OR6N1Q8NGY5 312 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 SSC4DQ8WTU2 575 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 UPB1Q9UBR1 384 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 FOXD3Q9UJU5 478 aaPredicted RBP18.71■□□□□ 0.59
VPS29-206ENST00000549578 DOPEY1Q5JWR5 2465 aa18.71■□□□□ 0.58
VPS29-206ENST00000549578 M0R3G1 203 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 ARHGEF9O43307 516 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 KRT33AO76009 404 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 TXNDC12O95881 172 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 NOS3P29474 1203 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 CSNK1A1P48729 337 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 ASCL1P50553 236 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 CRISP1P54107 249 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 CLRN1P58418 232 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 FAPQ12884 760 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 TMEM236Q5W0B7 351 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 FAM205BPQ63HN1 556 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 GPR137CQ8N3F9 429 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 POMGNT2Q8NAT1 580 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 NOXO1Q8NFA2 376 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 MRPL13Q9BYD1 178 aaKnown RBP18.7■□□□□ 0.58
VPS29-206ENST00000549578 RIBC2Q9H4K1 309 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 KCNJ16Q9NPI9 418 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 MALT1Q9UDY8 824 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 CACNA1CQ13936 2221 aa18.7■□□□□ 0.58
VPS29-206ENST00000549578 A6NIZ1 184 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 XKRYO14609 159 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 HIST1H1CP16403 213 aaKnown RBP18.69■□□□□ 0.58
VPS29-206ENST00000549578 POLR2IP36954 125 aaKnown RBP18.69■□□□□ 0.58
VPS29-206ENST00000549578 FOXG1P55316 489 aaPredicted RBP18.69■□□□□ 0.58
VPS29-206ENST00000549578 RAP1BP61224 184 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 ESRRGP62508 458 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 RAP1AP62834 184 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 GINS1Q14691 196 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 PGGHGQ32M88 737 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 OGFRL1Q5TC84 451 aaPredicted RBP18.69■□□□□ 0.58
VPS29-206ENST00000549578 SLC27A4Q6P1M0 643 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 Q6ZT83 130 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 BEND4Q6ZU67 534 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 GABRG1Q8N1C3 465 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 LNX2Q8N448 690 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 GALNT4Q8N4A0 578 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 TMEM54Q969K7 222 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 KCNK17Q96T54 332 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 RBM24Q9BX46 236 aaKnown RBP18.69■□□□□ 0.58
VPS29-206ENST00000549578 LINC00470Q9BZP3 86 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 GALNT8Q9NY28 637 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 ORC6Q9Y5N6 252 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 GCN1Q92616 2671 aaKnown RBP18.69■□□□□ 0.58
VPS29-206ENST00000549578 LRRK2Q5S007 2527 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 OR6C65A6NJZ3 312 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 IMPA2O14732 288 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 GIPRP48546 466 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 CDK5Q00535 292 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 MYBPC1Q00872 1141 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 CD47Q08722 323 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 PTGES3Q15185 160 aaKnown RBP18.69■□□□□ 0.58
VPS29-206ENST00000549578 ZIK1Q3SY52 487 aaPredicted RBP18.69■□□□□ 0.58
VPS29-206ENST00000549578 C9orf135Q5VTT2 229 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 ACSM5Q6NUN0 579 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 PTCHD4Q6ZW05 846 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 OR4K13Q8NH42 304 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 LRR1Q96L50 414 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 GABARAPL3Q9BY60 117 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 ULBP2Q9BZM5 246 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 ASB6Q9NWX5 421 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 GLTPQ9NZD2 209 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 ENOPH1Q9UHY7 261 aa18.69■□□□□ 0.58
VPS29-206ENST00000549578 IDH3BO43837 385 aa18.68■□□□□ 0.58
VPS29-206ENST00000549578 CNOT4O95628 575 aaKnown RBP18.68■□□□□ 0.58
VPS29-206ENST00000549578 CDKN2AP42771 156 aaKnown RBP18.68■□□□□ 0.58
VPS29-206ENST00000549578 RAD23AP54725 363 aa18.68■□□□□ 0.58
VPS29-206ENST00000549578 ROR2Q01974 943 aaKnown RBP18.68■□□□□ 0.58
VPS29-206ENST00000549578 FMODQ06828 376 aa18.68■□□□□ 0.58
VPS29-206ENST00000549578 NPRL3Q12980 569 aa18.68■□□□□ 0.58
VPS29-206ENST00000549578 HIST3H3Q16695 136 aa18.68■□□□□ 0.58
VPS29-206ENST00000549578 OR52E2Q8NGJ4 325 aa18.68■□□□□ 0.58
VPS29-206ENST00000549578 NRG4Q8WWG1 115 aa18.68■□□□□ 0.58
VPS29-206ENST00000549578 ZNF837Q96EG3 531 aaPredicted RBP18.68■□□□□ 0.58
VPS29-206ENST00000549578 CRLF2Q9HC73 371 aa18.68■□□□□ 0.58
VPS29-206ENST00000549578 BAIAP2Q9UQB8 552 aa18.68■□□□□ 0.58
VPS29-206ENST00000549578 FASNP49327 2511 aaKnown RBP18.67■□□□□ 0.58
VPS29-206ENST00000549578 PRSS37A4D1T9 235 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 CENPBD1B2RD01 187 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms