RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CCDC92Q53HC0 331 aaPredicted RBP15.29■□□□□ 0.04
USP28-208ENST00000540438 STAC2Q6ZMT1 411 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 FAM220AQ7Z4H9 259 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 OR52B4Q8NGK2 314 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 ACOT12Q8WYK0 555 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.29■□□□□ 0.04
USP28-208ENST00000540438 INPP5EQ9NRR6 644 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 SLC22A11Q9NSA0 550 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 ING3Q9NXR8 418 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 SLC23A1Q9UHI7 598 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 KLHL21Q9UJP4 597 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 BAIAP2Q9UQB8 552 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 DSPP15924 2871 aaKnown RBP15.29■□□□□ 0.04
USP28-208ENST00000540438 TEX51A0A1B0GUA7 166 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 XKRYO14609 159 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 UPK3AO75631 287 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 ASAH2BP0C7U1 165 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 DHPSP49366 369 aaPredicted RBP15.28■□□□□ 0.04
USP28-208ENST00000540438 RPS4XP62701 263 aaKnown RBP15.28■□□□□ 0.04
USP28-208ENST00000540438 BCL2A1Q16548 175 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 TCTE1Q5JU00 501 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 FNDC7Q5VTL7 733 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 PYHIN1Q6K0P9 492 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 SLC25A25Q6KCM7 469 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 TMEM205Q6UW68 189 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 PRSS35Q8N3Z0 413 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 MAP6Q96JE9 813 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 WWTR1Q9GZV5 400 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 CENPMQ9NSP4 180 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 CGGBP1Q9UFW8 167 aaPredicted RBP15.28■□□□□ 0.04
USP28-208ENST00000540438 B9D1Q9UPM9 204 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 ZFHX4Q86UP3 3567 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 BDP1A6H8Y1 2624 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 DCDC2BA2VCK2 349 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 SEC14L5O43304 696 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 ZNF217O75362 1048 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 CSN2P05814 226 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 NXPH1P58417 271 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 SERTAD2Q14140 314 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 OR7A5Q15622 319 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 LAMTOR1Q6IAA8 161 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 LCN10Q6JVE6 187 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 GUSBP11Q6P575 273 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 POMGNT2Q8NAT1 580 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 STT3BQ8TCJ2 826 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 SLC39A7Q92504 469 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 OR6C1Q96RD1 312 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 JAM3Q9BX67 310 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 NMNAT2Q9BZQ4 307 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 HIF3AQ9Y2N7 669 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 NBEAQ8NFP9 2946 aa15.28■□□□□ 0.04
USP28-208ENST00000540438 LOC100509620A0A075B734 347 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 IGKV1D-43A0A0B4J1Z2 117 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 TEX46H3BTG2 121 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 HLA-DQB1P01920 261 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 IGKV3-11P04433 115 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 ANXA7P20073 488 aaKnown RBP15.27■□□□□ 0.04
USP28-208ENST00000540438 ADAM8P78325 824 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 GALK2Q01415 458 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 MFGE8Q08431 387 aaPredicted RBP15.27■□□□□ 0.04
USP28-208ENST00000540438 POU4F2Q12837 409 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.27■□□□□ 0.04
USP28-208ENST00000540438 COL28A1Q2UY09 1125 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 TMEM69Q5SWH9 247 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 LRFN4Q6PJG9 635 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 OR4D10Q8NGI6 311 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 CCDC74AQ96AQ1 378 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 SLC46A1Q96NT5 459 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 SNX18Q96RF0 628 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 COPS7AQ9UBW8 275 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 MGAT4AQ9UM21 535 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 COA3Q9Y2R0 106 aaPredicted RBP15.27■□□□□ 0.04
USP28-208ENST00000540438 V9GY05 133 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 TMEM131Q92545 1883 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 EP300Q09472 2414 aaPredicted RBP15.27■□□□□ 0.04
USP28-208ENST00000540438 TMED7-TICAM2A0A0A6YYA0 188 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 ANXA2P2A6NMY6 339 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 ARPC1BO15143 372 aaKnown RBP15.27■□□□□ 0.04
USP28-208ENST00000540438 BCAT2O15382 392 aaPredicted RBP15.27■□□□□ 0.04
USP28-208ENST00000540438 SIX6O95475 246 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 ANXA2P07355 339 aaKnown RBP15.27■□□□□ 0.04
USP28-208ENST00000540438 KLK2P20151 261 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 LPAL2Q16609 132 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 CARD17Q5XLA6 110 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 Q6ZTK2 550 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 LRRC75AQ8NAA5 344 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 OR8H1Q8NGG4 311 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 ADAMTS18Q8TE60 1221 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 NPAP1Q9NZP6 1156 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 SUSD2Q9UGT4 822 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 TMED7Q9Y3B3 224 aa15.27■□□□□ 0.04
USP28-208ENST00000540438 ANKRD34BA5PLL1 514 aa15.27■□□□□ 0.03
USP28-208ENST00000540438 CELA2AP08217 269 aa15.27■□□□□ 0.03
USP28-208ENST00000540438 GZMKP49863 264 aa15.27■□□□□ 0.03
USP28-208ENST00000540438 ALKBH1Q13686 389 aaKnown RBP15.27■□□□□ 0.03
USP28-208ENST00000540438 WDR38Q5JTN6 314 aa15.27■□□□□ 0.03
USP28-208ENST00000540438 TPRA1Q86W33 373 aa15.27■□□□□ 0.03
USP28-208ENST00000540438 LILRB4Q8NHJ6 448 aa15.27■□□□□ 0.03
USP28-208ENST00000540438 DPAGT1Q9H3H5 408 aa15.27■□□□□ 0.03
USP28-208ENST00000540438 ERVH48-1M5A8F1 160 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms