RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 B3GNT2Q9NY97 397 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 GLTPQ9NZD2 209 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 A0A096LPE4 126 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 A0A1W2PPZ6 126 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 A0A1W2PRG6 482 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 SH3PXD2BA1X283 911 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 EFCAB9A8MZ26 197 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 ABCD4O14678 606 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 WNT11O96014 354 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 IGKV3-15P01624 115 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 IGLV1-44P01699 117 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 FABP3P05413 133 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 DANCRP0C864 163 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 ACADSP16219 412 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 PAX7P23759 505 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 CSNK1A1P48729 337 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 FXYD6P3P58550 94 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 BNIP1Q12981 228 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 KEAP1Q14145 624 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 DEFB113Q30KQ7 82 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 ALG10Q5BKT4 473 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 KLHL17Q6TDP4 642 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 DHFR2Q86XF0 187 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 ZDHHC21Q8IVQ6 265 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 CDK20Q8IZL9 346 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 KBTBD8Q8NFY9 601 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 OR4K5Q8NGD3 323 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 OR13C2Q8NGS9 318 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 OR6N1Q8NGY5 312 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 OR51A7Q8NH64 312 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 AKAP1Q92667 903 aaKnown RBP eCLIP11.32□□□□□ -0.6
VPS28-216ENST00000533806 RADILQ96JH8 1075 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 ZNF75AQ96N20 296 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 ZNF347Q96SE7 839 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 BTBD10Q9BSF8 475 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 THTPAQ9BU02 230 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 ULBP2Q9BZM5 246 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 MAGIXQ9H6Y5 334 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 UBTD1Q9HAC8 227 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 B3GAT2Q9NPZ5 323 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 ZNF224Q9NZL3 707 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 SIGLEC7Q9Y286 467 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 TMEM5Q9Y2B1 443 aa11.32□□□□□ -0.6
VPS28-216ENST00000533806 MAGED1Q9Y5V3 778 aaPredicted RBP11.32□□□□□ -0.6
VPS28-216ENST00000533806 TRAV27A0A087WT01 109 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 IGHV1-18A0A0C4DH31 117 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 TRMUO75648 421 aaKnown RBP11.31□□□□□ -0.6
VPS28-216ENST00000533806 GADD45GO95257 159 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 IGHG1P01857 330 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 SAGP10523 405 aaPredicted RBP11.31□□□□□ -0.6
VPS28-216ENST00000533806 GPR4P46093 362 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 DAP3P51398 398 aaKnown RBP11.31□□□□□ -0.6
VPS28-216ENST00000533806 ART1P52961 327 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 SMIM11AP58511 58 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 SPOCK1Q08629 439 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 TRAP1Q12931 704 aaKnown RBP11.31□□□□□ -0.6
VPS28-216ENST00000533806 TAF11Q15544 211 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 ZBED5Q49AG3 693 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 FGD3Q5JSP0 725 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 ZER1Q7Z7L7 766 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 CCDC36Q8IYA8 594 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 OR52J3Q8NH60 311 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 ZNF519Q8TB69 540 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 POP5Q969H6 163 aaKnown RBP11.31□□□□□ -0.6
VPS28-216ENST00000533806 MCHR2Q969V1 340 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 MCUR1Q96AQ8 359 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 FAM46AQ96IP4 442 aaKnown RBP11.31□□□□□ -0.6
VPS28-216ENST00000533806 KCNK17Q96T54 332 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 FOXB1Q99853 325 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 BEX4Q9NWD9 120 aaPredicted RBP11.31□□□□□ -0.6
VPS28-216ENST00000533806 ITGB1BP2Q9UKP3 347 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 ZNF346Q9UL40 294 aaKnown RBP11.31□□□□□ -0.6
VPS28-216ENST00000533806 MGAT4BQ9UQ53 548 aa11.31□□□□□ -0.6
VPS28-216ENST00000533806 ZNF469Q96JG9 3925 aaPredicted RBP11.3□□□□□ -0.6
VPS28-216ENST00000533806 MCIDASD6RGH6 385 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 M0R1B8 84 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 OVOL3O00110 214 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 GYG2O15488 501 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 DHHO43323 396 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 TMCC2O75069 709 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 SEC14L2O76054 403 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 QDPRP09417 244 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 PAX1P15863 534 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 CBR1P16152 277 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 HOXC12P31275 282 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 RRM2P31350 389 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 CTXN1P60606 82 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 RPL27P61353 136 aaKnown RBP11.3□□□□□ -0.6
VPS28-216ENST00000533806 TUBA1BP68363 451 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 TUBA4AP68366 448 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 PGGHGQ32M88 737 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 NRN1LQ496H8 165 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 DNAL1Q4LDG9 190 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 C10orf128Q5T292 105 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 KLHL24Q6TFL4 600 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 TUBA1AQ71U36 451 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 RRM2BQ7LG56 351 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 FAM122BQ7Z309 247 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 KRTAP1-3Q8IUG1 177 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 NOXO1Q8NFA2 376 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms