RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SPATA5L1Q9BVQ7 753 aa20.17■□□□□ 0.82
CPSF1-202ENST00000527827 ZNF416Q9BWM5 594 aa20.17■□□□□ 0.82
CPSF1-202ENST00000527827 PARD6BQ9BYG5 372 aa20.17■□□□□ 0.82
CPSF1-202ENST00000527827 TMEM27Q9HBJ8 222 aa20.17■□□□□ 0.82
CPSF1-202ENST00000527827 SELENONQ9NZV5 590 aa20.17■□□□□ 0.82
CPSF1-202ENST00000527827 FBXL3Q9UKT7 428 aa20.17■□□□□ 0.82
CPSF1-202ENST00000527827 ZNF346Q9UL40 294 aaKnown RBP20.17■□□□□ 0.82
CPSF1-202ENST00000527827 A0A1W2PPW3 197 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 SERPINA5P05154 406 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 AHCYP23526 432 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 MAGEB1P43366 347 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 CSNK1A1P48729 337 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 CDH12P55289 794 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 NCALDP61601 193 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 ACTG1P63261 375 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 ALKBH6Q3KRA9 238 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 LRIF1Q5T3J3 769 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 PIWIL3Q7Z3Z3 882 aaKnown RBP20.16■□□□□ 0.82
CPSF1-202ENST00000527827 KRT73Q86Y46 540 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 C10orf53Q8N6V4 93 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 ZNF418Q8TF45 676 aaPredicted RBP20.16■□□□□ 0.82
CPSF1-202ENST00000527827 TMEM54Q969K7 222 aa20.16■□□□□ 0.82
CPSF1-202ENST00000527827 TRAV20A0A0B4J274 112 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 CLPTM1O96005 669 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 AVPP01185 164 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 BIDP55957 195 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 HILS1P60008 231 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 MYBPC1Q00872 1141 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 SCGB2A2Q13296 93 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 FAHD2BQ6P2I3 314 aaPredicted RBP20.15■□□□□ 0.82
CPSF1-202ENST00000527827 FUNDC1Q8IVP5 155 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 FAHD2AQ96GK7 314 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 G6PC2Q9NQR9 355 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 PCDHB10Q9UN67 800 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 WNK2Q9Y3S1 2297 aa20.15■□□□□ 0.82
CPSF1-202ENST00000527827 TMEM89A2RUT3 159 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 C11orf98E9PRG8 122 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 PNPP00491 289 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 EGR1P18146 543 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 LSP1P33241 339 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 MRPL19P49406 292 aaKnown RBP20.14■□□□□ 0.81
CPSF1-202ENST00000527827 RGS7BPQ6MZT1 257 aaPredicted RBP20.14■□□□□ 0.81
CPSF1-202ENST00000527827 LINC00114Q6XXX2 140 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 SLC22A24Q8N4F4 322 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 PAQR4Q8N4S7 273 aaPredicted RBP20.14■□□□□ 0.81
CPSF1-202ENST00000527827 OR5J2Q8NH18 312 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 FAM216AQ8WUB2 273 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 TSPAN32Q96QS1 320 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 IKZF5Q9H5V7 419 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 GLTPQ9NZD2 209 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 VAPAQ9P0L0 249 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 TAAR3PQ9P1P4 343 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 GMEB1Q9Y692 573 aa20.14■□□□□ 0.81
CPSF1-202ENST00000527827 MGAM2Q2M2H8 2515 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 TRBV5-3A0A0A0MS03 114 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 MT-ATP6P00846 226 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 FAM157BP0CG42 384 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 ADORA3P0DMS8 318 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 EPHA1P21709 976 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 ARFIP2P53365 341 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 SCARB2Q14108 478 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 NKPD1Q17RQ9 610 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 PAGE3Q5JUK9 113 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 SWT1Q5T5J6 900 aaKnown RBP20.13■□□□□ 0.81
CPSF1-202ENST00000527827 USP43Q70EL4 1123 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 PEG10Q86TG7 708 aaKnown RBP20.13■□□□□ 0.81
CPSF1-202ENST00000527827 OR6X1Q8NH79 312 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 TMEM38AQ9H6F2 299 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 ZNF665Q9H7R5 613 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 SLC52A3Q9NQ40 469 aa20.13■□□□□ 0.81
CPSF1-202ENST00000527827 IGLV3-9A0A075B6K5 115 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 LOC105371242A0A075B767 164 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 PRORSD1PA6NEY8 169 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 C17orf100A8MU93 164 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 CDC14BO60729 498 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 CCL2P13500 99 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 SLC18A1P54219 525 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 ERVS71-1P61550 626 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 CCL8P80075 99 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 AVPI1Q5T686 147 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 LRFN4Q6PJG9 635 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 BLOC1S3Q6QNY0 202 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 EPGNQ6UW88 154 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 SLC35D2Q76EJ3 337 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 CROCCP2Q86T23 111 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 C3orf56Q8N813 242 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 SLC30A7Q8NEW0 376 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 GCDHQ92947 438 aaPredicted RBP20.12■□□□□ 0.81
CPSF1-202ENST00000527827 ZNF607Q96SK3 696 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 SH3GL3Q99963 347 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 HINT3Q9NQE9 182 aaKnown RBP20.12■□□□□ 0.81
CPSF1-202ENST00000527827 TMEM38BQ9NVV0 291 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 USH1CQ9Y6N9 552 aa20.12■□□□□ 0.81
CPSF1-202ENST00000527827 ZNF500O60304 480 aaPredicted RBP20.11■□□□□ 0.81
CPSF1-202ENST00000527827 OR8G3PP0DMU2 310 aa20.11■□□□□ 0.81
CPSF1-202ENST00000527827 ZNF250P15622 560 aa20.11■□□□□ 0.81
CPSF1-202ENST00000527827 PPIBP23284 216 aaKnown RBP20.11■□□□□ 0.81
CPSF1-202ENST00000527827 SLC6A2P23975 617 aa20.11■□□□□ 0.81
CPSF1-202ENST00000527827 AQP1P29972 269 aa20.11■□□□□ 0.81
CPSF1-202ENST00000527827 MVKQ03426 396 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms