RNA–Protein interactions for RNA: ENST00000512711.1

PDGFC-208, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-208ENST00000512711 CHRNA9Q9UGM1 479 aa0.75□□□□□ -2.29
PDGFC-208ENST00000512711 KIAA1257Q9ULG3 409 aa0.75□□□□□ -2.29
PDGFC-208ENST00000512711 CACNA1DQ01668 2161 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 CENPJQ9HC77 1338 aaPredicted RBP0.74□□□□□ -2.29
PDGFC-208ENST00000512711 FANCIQ9NVI1 1328 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 COL11A1P12107 1806 aaPredicted RBP0.74□□□□□ -2.29
PDGFC-208ENST00000512711 ZNF878C9JN71 531 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 F8WDY8 70 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 FOXE1O00358 373 aaPredicted RBP0.74□□□□□ -2.29
PDGFC-208ENST00000512711 MRPS12O15235 138 aaKnown RBP0.74□□□□□ -2.29
PDGFC-208ENST00000512711 GCM2O75603 506 aaPredicted RBP0.74□□□□□ -2.29
PDGFC-208ENST00000512711 ZNF806P0C7X5 589 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 IMPDH1P20839 514 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 HMGB2P26583 209 aaKnown RBP0.74□□□□□ -2.29
PDGFC-208ENST00000512711 CCR8P51685 355 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 TNFRSF17Q02223 184 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 GINS1Q14691 196 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 DMRTC1Q5HYR2 192 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 C1orf220Q5T0J3 134 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 ZFP1Q6P2D0 407 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 BLOC1S2Q6QNY1 142 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 UNQ9165/PRO28630Q6UXU0 137 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 SLC35F2Q8IXU6 374 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 LRRC52Q8N7C0 313 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 MRPL43Q8N983 215 aaKnown RBP0.74□□□□□ -2.29
PDGFC-208ENST00000512711 SDR42E1Q8WUS8 393 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 TM4SF18Q96CE8 201 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 C7orf34Q96L11 122 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 ZNF681Q96N22 645 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 ZNF382Q96SR6 550 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 SULT4A1Q9BR01 284 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 UBE2ZQ9H832 354 aaPredicted RBP0.74□□□□□ -2.29
PDGFC-208ENST00000512711 ELOVL3Q9HB03 270 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 CDH9Q9ULB4 789 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 MFHAS1Q9Y4C4 1052 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 MRPS18BQ9Y676 258 aaKnown RBP0.74□□□□□ -2.29
PDGFC-208ENST00000512711 PRRC2BQ5JSZ5 2229 aaKnown RBP0.74□□□□□ -2.29
PDGFC-208ENST00000512711 BAHCC1Q9P281 2608 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 CACNA1GO43497 2377 aa0.74□□□□□ -2.29
PDGFC-208ENST00000512711 ATP10AO60312 1499 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 IGHV3-74A0A0B4J1X5 117 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 CHST1O43916 411 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 BCAS1O75363 584 aaPredicted RBP0.73□□□□□ -2.29
PDGFC-208ENST00000512711 SCGB2A1O75556 95 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 ATP5LO75964 103 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 AP2A1O95782 977 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 FABP3P05413 133 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 CCDC130P13994 396 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 TNNI3P19429 210 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 GPR6P46095 362 aaPredicted RBP0.73□□□□□ -2.29
PDGFC-208ENST00000512711 QARSP47897 775 aaKnown RBP0.73□□□□□ -2.29
PDGFC-208ENST00000512711 RFX3P48380 749 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 SCRN3Q0VDG4 424 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 RGNQ15493 299 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 SASS6Q6UVJ0 657 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 ECHDC2Q86YB7 292 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 ZNF664Q8N3J9 261 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 FNDC5Q8NAU1 212 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 OR5D13Q8NGL4 314 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 OR4D5Q8NGN0 318 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 OR8U1Q8NH10 309 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 LINC01560Q8TB33 94 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 RTN4IP1Q8WWV3 396 aaPredicted RBP0.73□□□□□ -2.29
PDGFC-208ENST00000512711 MED8Q96G25 268 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 SHANK2-AS3Q9BTD1 123 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 RAB34Q9BZG1 259 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 SYNDIG1Q9H7V2 258 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 FBXO6Q9NRD1 293 aaPredicted RBP0.73□□□□□ -2.29
PDGFC-208ENST00000512711 SAMSN1Q9NSI8 373 aaKnown RBP0.73□□□□□ -2.29
PDGFC-208ENST00000512711 MOSPD1Q9UJG1 213 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 LAMP5Q9UJQ1 280 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 NOL7Q9UMY1 257 aaKnown RBP0.73□□□□□ -2.29
PDGFC-208ENST00000512711 PIN4Q9Y237 131 aaKnown RBP0.73□□□□□ -2.29
PDGFC-208ENST00000512711 KNSTRNQ9Y448 316 aa0.73□□□□□ -2.29
PDGFC-208ENST00000512711 COL5A3P25940 1745 aaPredicted RBP0.72□□□□□ -2.29
PDGFC-208ENST00000512711 A0A0U1RQV1 116 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 ZNF726A6NNF4 738 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 HIDE1A8MVS5 230 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 DEDDO75618 318 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 UPK3AO75631 287 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 SLC25A14O95258 325 aaPredicted RBP0.72□□□□□ -2.29
PDGFC-208ENST00000512711 HLA-DQA1P01909 254 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 APCSP02743 223 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 DRD5P21918 477 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 HTR2AP28223 471 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 GNA11P29992 359 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 CCND2P30279 289 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 RDXP35241 583 aaKnown RBP0.72□□□□□ -2.29
PDGFC-208ENST00000512711 CXCL12P48061 93 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 GDI2P50395 445 aaKnown RBP0.72□□□□□ -2.29
PDGFC-208ENST00000512711 CRYBB1P53674 252 aaPredicted RBP0.72□□□□□ -2.29
PDGFC-208ENST00000512711 PRRX1P54821 245 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 RBX1P62877 108 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 MEF2CQ06413 473 aaPredicted RBP0.72□□□□□ -2.29
PDGFC-208ENST00000512711 OR5I1Q13606 314 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 SMUG1Q53HV7 270 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 C10orf120Q5SQS8 335 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 TMEM225Q6GV28 225 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 UTS2BQ765I0 119 aa0.72□□□□□ -2.29
PDGFC-208ENST00000512711 VSTM4Q8IW00 320 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms