RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 LSP1P33241 339 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 CRYBB2P43320 205 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 KLF3P57682 345 aaPredicted RBP12.52□□□□□ -0.41
TRAF4-212ENST00000498540 PUDPQ08623 228 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 BST1Q10588 318 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 ZP4Q12836 540 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 STX3Q13277 289 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 PMS2P3Q13401 168 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 TMEM154Q6P9G4 183 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 SHISA2Q6UWI4 295 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 ZNF771Q7L3S4 317 aaPredicted RBP12.52□□□□□ -0.41
TRAF4-212ENST00000498540 KIRREL3Q8IZU9 778 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 MIER2Q8N344 545 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 SCAIQ8N9R8 606 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 BBS10Q8TAM1 723 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 DNAJA4Q8WW22 397 aaPredicted RBP12.52□□□□□ -0.41
TRAF4-212ENST00000498540 ASPNQ9BXN1 380 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 A4GALTQ9NPC4 353 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 THUMPD1Q9NXG2 353 aaKnown RBP12.52□□□□□ -0.41
TRAF4-212ENST00000498540 OPN4Q9UHM6 478 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 FBXL3Q9UKT7 428 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 WIPI2Q9Y4P8 454 aa12.52□□□□□ -0.41
TRAF4-212ENST00000498540 ZNF726A6NNF4 738 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 SLC22A3O75751 556 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 PRSS23O95084 383 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 HKR1P10072 659 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 ZNF250P15622 560 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 PRKAR1BP31321 381 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 CSNK1A1P48729 337 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 MPP2Q14168 576 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 RGNQ15493 299 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 PCGF3Q3KNV8 242 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 PDCD4Q53EL6 469 aaKnown RBP12.51□□□□□ -0.41
TRAF4-212ENST00000498540 C6orf10Q5SRN2 563 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 ULK3Q6PHR2 472 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 WDR88Q6ZMY6 472 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 USP51Q70EK9 711 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 SNX32Q86XE0 403 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 SLC30A7Q8NEW0 376 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 OR6S1Q8NH40 331 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 SYNPRQ8TBG9 265 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 SNX33Q8WV41 574 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 ITCHQ96J02 903 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 C1QTNF5Q9BXJ0 243 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 C7orf69Q9H7B7 122 aa12.51□□□□□ -0.41
TRAF4-212ENST00000498540 DDX28Q9NUL7 540 aaKnown RBP12.51□□□□□ -0.41
TRAF4-212ENST00000498540 MRPL39Q9NYK5 338 aaKnown RBP12.51□□□□□ -0.41
TRAF4-212ENST00000498540 CLDN25C9JDP6 229 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 PLPP3O14495 311 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 TM9SF1O15321 606 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 TPST1O60507 370 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 ARAFP10398 606 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 BMP2P12643 396 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 IDO1P14902 403 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 AHCYP23526 432 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 RAD52P43351 418 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 BIDP55957 195 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 VSNL1P62760 191 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 DEFA6Q01524 100 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 GLO1Q04760 184 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 RBBP4Q09028 425 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 FOXL1Q12952 345 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 MMEL1Q495T6 779 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 FAM91A1Q658Y4 838 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 PIWIL3Q7Z3Z3 882 aaKnown RBP12.5□□□□□ -0.41
TRAF4-212ENST00000498540 PXKQ7Z7A4 578 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 SLC22A24Q8N4F4 322 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 OR9I1Q8NGQ6 314 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 DVL3Q92997 716 aaPredicted RBP12.5□□□□□ -0.41
TRAF4-212ENST00000498540 SLC47A1Q96FL8 570 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 EPYCQ99645 322 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 SH3GL3Q99963 347 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 RMND5AQ9H871 391 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 NKIRAS2Q9NYR9 191 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 GPR160Q9UJ42 338 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 TANC2Q9HCD6 1990 aa12.5□□□□□ -0.41
TRAF4-212ENST00000498540 A0A0B4J2E0 115 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 A0A1B0GX12 115 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 C5orf58C9J3I9 102 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 C11orf98E9PRG8 122 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 TPD52L2O43399 206 aaKnown RBP12.49□□□□□ -0.41
TRAF4-212ENST00000498540 LCKP06239 509 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 ETS2P15036 469 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 SELENOVP59797 346 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 LCN2P80188 198 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 TEKQ02763 1124 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 TSTQ16762 297 aaKnown RBP12.49□□□□□ -0.41
TRAF4-212ENST00000498540 NXNQ6DKJ4 435 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 DHRS4L2Q6PKH6 230 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 MSANTD1Q6ZTZ1 278 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 C10orf53Q8N6V4 93 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 SIGLECL1Q8N7X8 197 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 ICA1LQ8NDH6 482 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 NFKBIDQ8NI38 313 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 ZNF519Q8TB69 540 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 TMEM54Q969K7 222 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 DUX5Q96PT3 197 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 WFDC6Q9BQY6 131 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 TMEM109Q9BVC6 243 aa12.49□□□□□ -0.41
TRAF4-212ENST00000498540 PAIP1Q9H074 479 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms