RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 IGLV5-52A0A0A0MRZ9 124 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 A0A0G2JN53 185 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 LCE6AA0A183 80 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 A0A1B0GUV1 79 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 OR2M5A3KFT3 312 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 NCF1BA6NI72 391 aaPredicted RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 C17orf100A8MU93 164 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 NCF1CA8MVU1 366 aaPredicted RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 MYO1GB0I1T2 1018 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 M0QZ24 198 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 RTCAO00442 366 aaKnown RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 CLOCKO15516 846 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 EEDO75530 441 aaKnown RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 AGR2O95994 175 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 ADAP00813 363 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 TK1P04183 234 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 C2P06681 752 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 KLK1P06870 262 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 YES1P07947 543 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 NCF1P14598 390 aaPredicted RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 HPGDP15428 266 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 TAC1P20366 129 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 COX5AP20674 150 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 IL32P24001 234 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 NTSP30990 170 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 DCTDP32321 178 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 MAGEA8P43361 318 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 MAGEA12P43365 314 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 EFNA4P52798 201 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 CLDN15P56746 228 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 GPX6P59796 221 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 CSNK2A1P68400 391 aaPredicted RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 TGFBR3Q03167 851 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 ACSM2AQ08AH3 577 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 ZNF763Q0D2J5 394 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 TRAF3Q13114 568 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 SELENBP1Q13228 472 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 OR4D1Q15615 310 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 ZSWIM7Q19AV6 140 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 SLC25A53Q5H9E4 307 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 DCST1Q5T197 706 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 ACSM2BQ68CK6 577 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 REP15Q6BDI9 236 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 WBP2NLQ6ICG8 309 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 USP43Q70EL4 1123 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 GOLGA7Q7Z5G4 137 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 ABHD12BQ7Z5M8 362 aaPredicted RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 OR4N5Q8IXE1 308 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 CCDC36Q8IYA8 594 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 KIRREL3Q8IZU9 778 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 GCNT2Q8N0V5 402 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 SETD9Q8NE22 299 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 OR4N2Q8NGD1 307 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 OR2V1Q8NHB1 315 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 LILRB1Q8NHL6 650 aaPredicted RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 FNDC9Q8TBE3 224 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 RAB3IL1Q8TBN0 382 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 ACMSDQ8TDX5 336 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 C10orf105Q8TEF2 133 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 SELENOMQ8WWX9 145 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 TMBIM1Q969X1 311 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 TM4SF18Q96CE8 201 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 RNFT2Q96EX2 444 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 CNRIP1Q96F85 164 aaPredicted RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 CFAP36Q96G28 342 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 KLHL15Q96M94 604 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 ZNF382Q96SR6 550 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 TRAF4Q9BUZ4 470 aaPredicted RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 ITPAQ9BY32 194 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 FKRPQ9H9S5 495 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 MYNNQ9NPC7 610 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 ESM1Q9NQ30 184 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 TCF7L2Q9NQB0 619 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 MIEF1Q9NQG6 463 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 PFDN4Q9NQP4 134 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 SMYD2Q9NRG4 433 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 CBLN4Q9NTU7 201 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 PCTPQ9UKL6 214 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 B3GALT5Q9Y2C3 310 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 PPIAL4AQ9Y536 164 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 SPIN1Q9Y657 262 aaPredicted RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 PLCE1Q9P212 2302 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 SAA2-SAA4A0A096LPE2 208 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 IGHV4-61A0A0C4DH41 118 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 LOC390937A0A1W2PQ73 354 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 DUXAA6NLW8 204 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 TIMM23O14925 209 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 PGRMC2O15173 223 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 EIF4E2O60573 245 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 EIF1BO60739 113 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 ENTPD5O75356 428 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 GCM2O75603 506 aaPredicted RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 ERAL1O75616 437 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 RSL1D1O76021 490 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 LY6HO94772 140 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 NKX2-2O95096 273 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 ANGPTL1O95841 491 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 CD8AP01732 235 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 GSTA1P08263 222 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 RPS17P08708 135 aaKnown RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms