RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 ARHGEF9O43307 516 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 MITFO75030 526 aaPredicted RBP12.86□□□□□ -0.35
BRCA1-223ENST00000494123 UPK3AO75631 287 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 TP53P04637 393 aaPredicted RBP12.86□□□□□ -0.35
BRCA1-223ENST00000494123 RNF224P0DH78 156 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 NR2C1P13056 603 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 APEHP13798 732 aaKnown RBP12.86□□□□□ -0.35
BRCA1-223ENST00000494123 CDH2P19022 906 aaPredicted RBP12.86□□□□□ -0.35
BRCA1-223ENST00000494123 ALDH3A2P51648 485 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 LGALS3BPQ08380 585 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 CD47Q08722 323 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 KRR1Q13601 381 aaKnown RBP12.86□□□□□ -0.35
BRCA1-223ENST00000494123 SLC27A4Q6P1M0 643 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 CLEC18BQ6UXF7 455 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 FAM122BQ7Z309 247 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 JAZF1Q86VZ6 243 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 WDFY1Q8IWB7 410 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 C20orf196Q8IYI0 205 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 SYT14Q8NB59 555 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 CLEC18CQ8NCF0 446 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 NOXO1Q8NFA2 376 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 ZNF519Q8TB69 540 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 LRR1Q96L50 414 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 LINC00470Q9BZP3 86 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 RNPEPL1Q9HAU8 725 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 BAIAP2Q9UQB8 552 aa12.86□□□□□ -0.35
BRCA1-223ENST00000494123 CENPBD1B2RD01 187 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 BHLHE40O14503 412 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 IMPA2O14732 288 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 ARPC3O15145 178 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 IDH3BO43837 385 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 MGRN1O60291 552 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 TRMUO75648 421 aaKnown RBP12.85□□□□□ -0.35
BRCA1-223ENST00000494123 ALPLP05186 524 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 PGA4P0DJD7 388 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 PGA3P0DJD8 388 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 CRISP1P54107 249 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 RAD23AP54725 363 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 ESRRGP62508 458 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 RUNX1T1Q06455 604 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 SLC34A1Q06495 639 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 ITGADQ13349 1161 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 LRRC36Q1X8D7 754 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 SLC35F1Q5T1Q4 408 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 RNASE6Q93091 150 aaKnown RBP12.85□□□□□ -0.35
BRCA1-223ENST00000494123 TEX12Q9BXU0 123 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 ULBP2Q9BZM5 246 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 GALNT8Q9NY28 637 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 USE1Q9NZ43 259 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 GLTPQ9NZD2 209 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 TMEFF2Q9UIK5 374 aaPredicted RBP12.85□□□□□ -0.35
BRCA1-223ENST00000494123 FOXD3Q9UJU5 478 aaPredicted RBP12.85□□□□□ -0.35
BRCA1-223ENST00000494123 GCN1Q92616 2671 aaKnown RBP12.85□□□□□ -0.35
BRCA1-223ENST00000494123 TENM4Q6N022 2769 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 CACNA1CQ13936 2221 aa12.85□□□□□ -0.35
BRCA1-223ENST00000494123 TXNDC12O95881 172 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 PEX2P28328 305 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 CD79BP40259 229 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 MYBPC1Q00872 1141 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 ROR2Q01974 943 aaKnown RBP12.84□□□□□ -0.35
BRCA1-223ENST00000494123 GINS1Q14691 196 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 P2RY6Q15077 328 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 PGGHGQ32M88 737 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 FBXL19-AS1Q494R0 122 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 MESTQ5EB52 335 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 C9orf135Q5VTT2 229 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 LPCAT4Q643R3 524 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 ADCK1Q86TW2 530 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 GABRG1Q8N1C3 465 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 LNX2Q8N448 690 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 IQCF1Q8N6M8 205 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 OR4Q3Q8NH05 313 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 FNDC8Q8TC99 324 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 HDAC2Q92769 488 aaKnown RBP12.84□□□□□ -0.35
BRCA1-223ENST00000494123 TMEM54Q969K7 222 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 RBP7Q96R05 134 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 KCNK17Q96T54 332 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 ALG12Q9BV10 488 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 RIBC2Q9H4K1 309 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 CRLF2Q9HC73 371 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 NKX1-2Q9UD57 310 aaPredicted RBP12.84□□□□□ -0.35
BRCA1-223ENST00000494123 DOPEY1Q5JWR5 2465 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 H7C1C5 153 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 HIST1H1CP16403 213 aaKnown RBP12.84□□□□□ -0.35
BRCA1-223ENST00000494123 LCN6P62502 163 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 FAM27E3Q08E93 113 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 RIPK1Q13546 671 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 PHYHD1Q5SRE7 291 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 CXorf67Q86X51 503 aaPredicted RBP12.84□□□□□ -0.35
BRCA1-223ENST00000494123 OR4K13Q8NH42 304 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 KISS1RQ969F8 398 aaPredicted RBP12.84□□□□□ -0.35
BRCA1-223ENST00000494123 SLC29A1Q99808 456 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 MRPL13Q9BYD1 178 aaKnown RBP12.84□□□□□ -0.35
BRCA1-223ENST00000494123 GPR35Q9HC97 309 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 C8orf4Q9NR00 106 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 TAS2R16Q9NYV7 291 aa12.84□□□□□ -0.35
BRCA1-223ENST00000494123 LRRK2Q5S007 2527 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 SPTBN1Q01082 2364 aaKnown RBP12.83□□□□□ -0.36
BRCA1-223ENST00000494123 CIB4A0PJX0 185 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 PRSS37A4D1T9 235 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms