RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ETFBKMTQ8IXQ9 262 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 EID2Q8N6I1 236 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 OR13C5Q8NGS8 318 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 TTC9Q92623 222 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 KLHL15Q96M94 604 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 LDAHQ9H6V9 325 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 CYSLTR2Q9NS75 346 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 DEFA6Q01524 100 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 TMEM81Q6P7N7 255 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 OR5B2Q96R09 309 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 PTRH2Q9Y3E5 179 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF337Q9Y3M9 751 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 CACNA1IQ9P0X4 2223 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 SCN10AQ9Y5Y9 1956 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 FBXO24O75426 580 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF43P17038 809 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 CD27P26842 260 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 HOXC12P31275 282 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 PPT1P50897 306 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 AFF3P51826 1226 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 PLEKHN1Q494U1 663 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 LRRC69Q6ZNQ3 347 aa14.98□□□□□ -0.01
CCDC88B-209ENST00000494080 OR2T1O43869 369 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 IFNA17P01571 189 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 HSD11B2P80365 405 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 ADGRG3Q86Y34 549 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC25A44Q96H78 314 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 C10orf90Q96M02 699 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 NMNAT3Q96T66 252 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 ISG20L2Q9H9L3 353 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC17A4Q9Y2C5 497 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 PRELID3BQ9Y3B1 194 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 SPTBN2O15020 2390 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 MYOFQ9NZM1 2061 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 TSPAN11A1L157 253 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF208O43345 1280 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 TACR3P29371 465 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 TAS2R19P59542 299 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 FOXK2Q01167 660 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 C14orf28Q4W4Y0 310 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 RNF113BQ8IZP6 322 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 LINC01555Q8NAE3 123 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 HRASLSQ9HDD0 168 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC52A3Q9NQ40 469 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 SIT1Q9Y3P8 196 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 TLCD2A6NGC4 264 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 GABARAPH6UMI1 98 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 MOSPD3O75425 235 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 IL33O95760 270 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 ERCC1P07992 297 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 FGF9P31371 208 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 ST3GAL2Q16842 350 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF628Q5EBL2 1059 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 YOD1Q5VVQ6 348 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 RHBDD1Q8TEB9 315 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 HCAR1Q9BXC0 346 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 APMAPQ9HDC9 416 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 FGF20Q9NP95 211 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 C2orf42Q9NWW7 574 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF175Q9Y473 711 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 VASPP50552 380 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC25A35Q3KQZ1 300 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 PPP1R3BQ86XI6 285 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 CMIPQ8IY22 773 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 PFN4Q8NHR9 129 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 BMFQ96LC9 184 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 TCEAL2Q9H3H9 227 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 PIGMQ9H3S5 423 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 KCNJ16Q9NPI9 418 aa14.97□□□□□ -0.01
CCDC88B-209ENST00000494080 ARID2Q68CP9 1835 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 TRBV5-3A0A0A0MS03 114 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 ARRDC5A6NEK1 342 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 HOXB3P14651 431 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 CXCL3P19876 107 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 TUBG1P23258 451 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 S100GP29377 79 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 EIF2B1Q14232 305 aaKnown RBP14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 LCN10Q6JVE6 187 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 PGAP1Q75T13 922 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 OR13C3Q8NGS6 347 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 ATOH1Q92858 354 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 FAM46BQ96A09 425 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 LINC00052Q96N35 136 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF578Q96N58 590 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 MEPEQ9NQ76 525 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 C19orf53Q9UNZ5 99 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 PCM1Q15154 2024 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 TRBV11-1A0A0K0K1C0 115 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 MAGEB4O15481 346 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 RRASP10301 218 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 AMY2BP19961 511 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 RUNX2Q13950 521 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 OR51S1Q8NGJ8 323 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 CFHR5Q9BXR6 569 aa14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 TDRD15B5MCY1 1934 aaKnown RBP14.96□□□□□ -0.01
CCDC88B-209ENST00000494080 RD3LP0DJH9 198 aa14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 NID1P14543 1247 aa14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 RPS15P62841 145 aaKnown RBP14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 CBFBQ13951 182 aa14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 P4HA3Q7Z4N8 544 aa14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms