RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 RFX3P48380 749 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 EFNB2P52799 333 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 GNB2P62879 340 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 SKP1P63208 163 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 TLE4Q04727 773 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 LRRC63Q05C16 580 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 CDH17Q12864 832 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 LAGE3Q14657 143 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 IL17AQ16552 155 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 C8orf74Q6P047 294 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 RBM45Q8IUH3 476 aaKnown RBP3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 NUDCD3Q8IVD9 361 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 MMAAQ8IVH4 418 aaKnown RBP3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 SLC7A5P1Q8MH63 180 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 RNF10Q8N5U6 811 aaKnown RBP3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 FAM86B1Q8N7N1 296 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 GATSQ8NAP1 163 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 FBXL13Q8NEE6 735 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 SDR9C7Q8NEX9 313 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 OR51L1Q8NGJ5 315 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 OR1L6Q8NGR2 347 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 ANKRD7Q92527 254 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 DCUN1D4Q92564 292 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 GLT1D1Q96MS3 346 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 ZNF317Q96PQ6 595 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 SDHCQ99643 169 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 PRRG3Q9BZD7 231 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 CHIAQ9BZP6 476 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 NT5MQ9NPB1 228 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 MYOZ2Q9NPC6 264 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 SLC17A5Q9NRA2 495 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 EMC3Q9P0I2 261 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 STOX2Q9P2F5 926 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 PRO0461Q9UI25 63 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 GGA2Q9UJY4 613 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 NPIPA1Q9UND3 350 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 SLC22A14Q9Y267 594 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 POLDIP2Q9Y2S7 368 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 USP16Q9Y5T5 823 aa3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 RPAP1Q9BWH6 1393 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P38-201ENST00000490557 IQANK1A0A1B0GTG1 560 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 LRP5LA4QPB2 252 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 LRRIQ3A6PVS8 624 aaPredicted RBP3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 SULT2B1O00204 365 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 UGT2B17O75795 530 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 HOXB8P17481 243 aaPredicted RBP3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 MMP11P24347 488 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 NAA10P41227 235 aaPredicted RBP3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 BTDP43251 543 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 HLCSP50747 726 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 PLK1P53350 603 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 PSMD4P55036 377 aaKnown RBP3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 CDK16Q00536 496 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 CHRNB3Q05901 458 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 ITIH4Q14624 930 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 MRPL23Q16540 153 aaKnown RBP3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 CCDC14Q49A88 953 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 WDR74Q6RFH5 385 aaPredicted RBP3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 C19orf35Q6ZS72 473 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 MTERF4Q7Z6M4 381 aaKnown RBP3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 LRRC8AQ8IWT6 810 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 C12orf56Q8IXR9 622 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 C15orf54Q8N8G6 183 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 OR9G4Q8NGQ1 327 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 CDKL2Q92772 493 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 CCDC124Q96CT7 223 aaKnown RBP3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 TIMD4Q96H15 378 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 ALS2CR12Q96Q35 445 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 EBF4Q9BQW3 602 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 HINT2Q9BX68 163 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 RAB1BQ9H0U4 201 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 NXF5Q9H1B4 397 aaKnown RBP3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 OR2AG1Q9H205 316 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 OR51J1Q9H342 316 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 GOLPH3Q9H4A6 298 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 ZNF385DQ9H6B1 395 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 CSNK1G1Q9HCP0 422 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 ADAP2Q9NPF8 381 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 NKIRAS1Q9NYS0 192 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 SCML2Q9UQR0 700 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 RBMX2Q9Y388 322 aaKnown RBP3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 ALG6Q9Y672 507 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 CHD4Q14839 1912 aa3.32□□□□□ -1.88
HMGB1P38-201ENST00000490557 NEURL4Q96JN8 1562 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 MROH7-TTC4A0A0A0MT08 1334 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 A0A1W2PPE3 182 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 TMEM120BA0PK00 339 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 EFNA2O43921 213 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 B3GAT3O94766 335 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 DIRAS1O95057 198 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 F10P00742 488 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 IGF1P05019 195 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 H2BFMP0C1H6 154 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 UBCP0CG48 685 aaKnown RBP3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 NR2C1P13056 603 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 RNH1P13489 461 aaKnown RBP3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 PGCP20142 388 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 IMPDH1P20839 514 aa3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 HMGB2P26583 209 aaKnown RBP3.31□□□□□ -1.88
HMGB1P38-201ENST00000490557 CRATP43155 626 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms