RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 PSKH2Q96QS6 385 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 FMO2Q99518 471 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 COPS8Q99627 209 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 FAIM2Q9BWQ8 316 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 OSBPL11Q9BXB4 747 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 GON7Q9BXV9 100 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 PPA2Q9H2U2 334 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 VCX2Q9H322 139 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 ZNF430Q9H8G1 570 aaPredicted RBP1.24□□□□□ -2.21
SMC4-220ENST00000488017 UGT1A7Q9HAW7 530 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 UGT1A10Q9HAW8 530 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 UGT1A8Q9HAW9 530 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 ADAP2Q9NPF8 381 aa1.24□□□□□ -2.21
SMC4-220ENST00000488017 CARMIL3Q8ND23 1372 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 CEMIPQ8WUJ3 1361 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 CABIN1Q9Y6J0 2220 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 NFASCO94856 1347 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 C15orf38-AP3S2A0A0A6YYH1 394 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 TRAV40A0A0B4J280 105 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 CIB4A0PJX0 185 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 COLCA2A8K830 154 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 FOXE1O00358 373 aaPredicted RBP1.23□□□□□ -2.21
SMC4-220ENST00000488017 PEX7O00628 323 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 TIMM8AO60220 97 aaPredicted RBP1.23□□□□□ -2.21
SMC4-220ENST00000488017 SPAG6O75602 509 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 OR7A10O76100 309 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 IL1BP01584 269 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 PTMAP06454 111 aaKnown RBP1.23□□□□□ -2.21
SMC4-220ENST00000488017 DCNP07585 359 aaKnown RBP1.23□□□□□ -2.21
SMC4-220ENST00000488017 CSF3P09919 207 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 RHOXF2BP0C7M4 288 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 TLX1NBP0CAT3 122 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 UBTFL1P0CB47 393 aaPredicted RBP1.23□□□□□ -2.21
SMC4-220ENST00000488017 GKN3PP0CG01 181 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 IGHV3-43DP0DP04 118 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 MUC1P15941 1255 aaPredicted RBP1.23□□□□□ -2.21
SMC4-220ENST00000488017 CELP19835 753 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 GLRA2P23416 452 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 DEKP35659 375 aaKnown RBP1.23□□□□□ -2.21
SMC4-220ENST00000488017 NPBWR2P48146 333 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 UBE2AP49459 152 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 NCBP2P52298 156 aaKnown RBP eCLIP1.23□□□□□ -2.21
SMC4-220ENST00000488017 ARFIP1P53367 373 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 AIF1P55008 147 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 ERVK-25P63136 954 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 SCRN3Q0VDG4 424 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 SMARCB1Q12824 385 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 AQP6Q13520 282 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 GNMTQ14749 295 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 ANKDD1AQ495B1 522 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 ZBED5Q49AG3 693 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 OR2A2Q6IF42 318 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 LYPD2Q6UXB3 125 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 BRD3OSQ6XYD6 125 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 UTS2BQ765I0 119 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 MYOCDQ8IZQ8 938 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 VN1R2Q8NFZ6 395 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 OR1L4Q8NGR5 311 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 ACTRT1Q8TDG2 376 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 MED8Q96G25 268 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 AURKBQ96GD4 344 aaPredicted RBP1.23□□□□□ -2.21
SMC4-220ENST00000488017 NAP1L5Q96NT1 182 aaPredicted RBP1.23□□□□□ -2.21
SMC4-220ENST00000488017 PANX2Q96RD6 677 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 NDFIP1Q9BT67 221 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 TRIM62Q9BVG3 475 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 GABARAPL3Q9BY60 117 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 MCCC2Q9HCC0 563 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 OR12D3Q9UGF7 316 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 WDR62O43379 1518 aa1.23□□□□□ -2.21
SMC4-220ENST00000488017 TET2Q6N021 2002 aaPredicted RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 A0A1B0GVI7 797 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 CCDC182A6NF36 153 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 SNTNA6NMZ2 147 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 GPR89AB7ZAQ6 455 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 H3BNH8 94 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 FCMRO60667 390 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 ENTPD5O75356 428 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 RCBTB2O95199 551 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 CLDN9O95484 217 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 C1orf105O95561 183 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 IGHV2-5P01817 119 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 GAPDHP04406 335 aaKnown RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 GPR89BP0CG08 455 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 DBTP11182 482 aaKnown RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 TCN1P20061 433 aaPredicted RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 CD1CP29017 333 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 GPR6P46095 362 aaPredicted RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 HNMTP50135 292 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 GBX2P52951 348 aaPredicted RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 SEC61GP60059 68 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 RPS21P63220 83 aaKnown RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 HMGCS1Q01581 520 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 PPIL2Q13356 520 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 GPM6BQ13491 265 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 PDK3Q15120 406 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 TAF7Q15545 349 aaPredicted RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 PRSS8Q16651 343 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 DGUOKQ16854 277 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 TRIM40Q6P9F5 258 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 Q6ZR03 302 aa1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms