RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 CCNE1P24864 410 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 TDGF1P3P51864 188 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 CDH6P55285 790 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 YWHAGP61981 247 aaKnown RBP eCLIP3.09□□□□□ -1.91
SMC4-218ENST00000486711 FRMPD2BQ6IN97 320 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 ACP7Q6ZNF0 438 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 H2AFVQ71UI9 128 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 CENPQQ7L2Z9 268 aaPredicted RBP3.09□□□□□ -1.91
SMC4-218ENST00000486711 CAMK2N1Q7Z7J9 78 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 THOC6Q86W42 341 aaKnown RBP3.09□□□□□ -1.91
SMC4-218ENST00000486711 KIR2DL5AQ8N109 375 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 LIX1Q8N485 282 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 EID2Q8N6I1 236 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 KIR2DL5BQ8NHK3 375 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 SLC22A8Q8TCC7 542 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 BLOC1S5Q8TDH9 187 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 CXorf40AQ8TE69 158 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 SLC38A4Q969I6 547 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 SGK3Q96BR1 496 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 CCDC126Q96EE4 140 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 ZNF578Q96N58 590 aaPredicted RBP3.09□□□□□ -1.91
SMC4-218ENST00000486711 OSBPL10Q9BXB5 764 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 INPP5EQ9NRR6 644 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 RAB20Q9NX57 234 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 SLC25A37Q9NYZ2 338 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 NYAP2Q9P242 653 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 SHPKQ9UHJ6 478 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 HEBP2Q9Y5Z4 205 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 CACNG2Q9Y698 323 aa3.09□□□□□ -1.91
SMC4-218ENST00000486711 A0A075B6Q4 140 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 PINLYPA6NC86 204 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 A6NDX4 124 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 LRRIQ3A6PVS8 624 aaPredicted RBP3.08□□□□□ -1.92
SMC4-218ENST00000486711 XKRYO14609 159 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 AIM2O14862 343 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 TRAF3IP2O43734 574 aaPredicted RBP3.08□□□□□ -1.92
SMC4-218ENST00000486711 MOSP00540 346 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 FGGP02679 453 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 CT62P0C5K7 136 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 CALM1P0DP23 149 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 CALM2P0DP24 149 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 CALM3P0DP25 149 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 EIF2S2P20042 333 aaKnown RBP3.08□□□□□ -1.92
SMC4-218ENST00000486711 RRM2P31350 389 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 ZNF133P52736 654 aaPredicted RBP3.08□□□□□ -1.92
SMC4-218ENST00000486711 GPX6P59796 221 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 ZNF92Q03936 586 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 TGM3Q08188 693 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 SMARCB1Q12824 385 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 ECH1Q13011 328 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 AQP6Q13520 282 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 MPPED2Q15777 294 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 PRAMEF20Q5VT98 475 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 SLC8B1Q6J4K2 584 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 COX15Q7KZN9 410 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 NIPA1Q7RTP0 329 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 PDIK1LQ8N165 341 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 Q8N9W7 124 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 OR7G2Q8NG99 324 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 FAM81AQ8TBF8 368 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 DTX3LQ8TDB6 740 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 RNF138Q8WVD3 245 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 GEMIN6Q8WXD5 167 aaKnown RBP3.08□□□□□ -1.92
SMC4-218ENST00000486711 SH3GL3Q99963 347 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 NEK6Q9HC98 313 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 DEC1Q9P2X7 70 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 PCYOX1Q9UHG3 505 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 USP47Q96K76 1375 aa3.08□□□□□ -1.92
SMC4-218ENST00000486711 WI2-2373I1.2A0A1W2PRP0 233 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 NKX2-6A6NCS4 301 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 TCP11X1B4DZS4 312 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 ERVV-1B6SEH8 477 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 CDC7O00311 574 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 PEX7O00628 323 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 CLOCKO15516 846 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 EEDO75530 441 aaKnown RBP3.07□□□□□ -1.92
SMC4-218ENST00000486711 FTH1P02794 183 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 PABPC4LP0CB38 370 aaKnown RBP3.07□□□□□ -1.92
SMC4-218ENST00000486711 ZNF43P17038 809 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 FOXN2P32314 431 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 RORCP51449 518 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 CCR8P51685 355 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 CCNHP51946 323 aaPredicted RBP3.07□□□□□ -1.92
SMC4-218ENST00000486711 RGS8P57771 180 aaPredicted RBP3.07□□□□□ -1.92
SMC4-218ENST00000486711 CKAP4Q07065 602 aaKnown RBP3.07□□□□□ -1.92
SMC4-218ENST00000486711 FZD2Q14332 565 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 PRPSAP1Q14558 356 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 ZNF836Q6ZNA1 936 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 C6orf120Q7Z4R8 191 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 MKXQ8IYA7 352 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 MS4A15Q8N5U1 240 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 NPBQ8NG41 125 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 OR4C5Q8NGB2 326 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 OR51G1Q8NGK1 321 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 MCUR1Q96AQ8 359 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 ATP5SQ99766 215 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 ZNF226Q9NYT6 803 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 PITPNC1Q9UKF7 332 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 TRAPPC4Q9Y296 219 aa3.07□□□□□ -1.92
SMC4-218ENST00000486711 PHF3Q92576 2039 aaKnown RBP3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms