RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 RAF1P04049 648 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 TSPAN19P0C672 248 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 PGA4P0DJD7 388 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 PGA3P0DJD8 388 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 SLC9A3P48764 834 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 CTXN1P60606 82 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 MYBPC1Q00872 1141 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 CHRNB3Q05901 458 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 RUNX1T1Q06455 604 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 SPOCK1Q08629 439 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 BNIP1Q12981 228 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 TMEM108Q6UXF1 575 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 TMPRSS11FQ6ZWK6 438 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 PIAS4Q8N2W9 510 aaPredicted RBP12.91□□□□□ -0.34
USP4-212ENST00000486549 SYT14Q8NB59 555 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 NOXO1Q8NFA2 376 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 AKAP1Q92667 903 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP4-212ENST00000486549 NEUROG1Q92886 237 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 TMEM54Q969K7 222 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 ALPK1Q96QP1 1244 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 TMEM204Q9BSN7 226 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 TRIM15Q9C019 465 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 CXXC4Q9H2H0 198 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 GLTPQ9NZD2 209 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 MAGED1Q9Y5V3 778 aaPredicted RBP12.91□□□□□ -0.34
USP4-212ENST00000486549 SH3PXD2BA1X283 911 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 OR10H3O60404 316 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 ATE1O95260 518 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 B4GALT1P15291 398 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 RPL4P36578 427 aaKnown RBP12.9□□□□□ -0.34
USP4-212ENST00000486549 OMPP47874 163 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 TRAP1Q12931 704 aaKnown RBP12.9□□□□□ -0.34
USP4-212ENST00000486549 FHL1Q13642 323 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 FAM98BQ52LJ0 330 aaKnown RBP12.9□□□□□ -0.34
USP4-212ENST00000486549 ZNF813Q6ZN06 617 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 PIWIL3Q7Z3Z3 882 aaKnown RBP12.9□□□□□ -0.34
USP4-212ENST00000486549 HDDC2Q7Z4H3 204 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 RSRC1Q96IZ7 334 aaKnown RBP12.9□□□□□ -0.34
USP4-212ENST00000486549 TSPAN32Q96QS1 320 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 FUZQ9BT04 418 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 TXNIPQ9H3M7 391 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 MAGIXQ9H6Y5 334 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 ZNF346Q9UL40 294 aaKnown RBP12.9□□□□□ -0.34
USP4-212ENST00000486549 TMCC3Q9ULS5 477 aa12.9□□□□□ -0.34
USP4-212ENST00000486549 F8P00451 2351 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 DSCAMO60469 2012 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 HEATR1Q9H583 2144 aaKnown RBP12.89□□□□□ -0.35
USP4-212ENST00000486549 ARPC4-TTLL3A0A0A6YYG9 625 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 UNC119BA6NIH7 251 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 ACOT8O14734 319 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 HS3ST1O14792 307 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 TRMUO75648 421 aaKnown RBP12.89□□□□□ -0.35
USP4-212ENST00000486549 QDPRP09417 244 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 ACADSP16219 412 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 PTAFRP25105 342 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 CD40P25942 277 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 ACVR1BP36896 505 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 MAGEA2P43356 314 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 LIMS1P48059 325 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 ERFP50548 548 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 CDH11P55287 796 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 RPL27P61353 136 aaKnown RBP12.89□□□□□ -0.35
USP4-212ENST00000486549 ERVK-25P63136 954 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 CD47Q08722 323 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 FLOT2Q14254 428 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 ANKDD1AQ495B1 522 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 ZBED5Q49AG3 693 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 ARMC4Q5T2S8 1044 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 PGM2L1Q6PCE3 622 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 LRRC75AQ8NAA5 344 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 MAGEE2Q8TD90 523 aaPredicted RBP12.89□□□□□ -0.35
USP4-212ENST00000486549 HDAC2Q92769 488 aaKnown RBP12.89□□□□□ -0.35
USP4-212ENST00000486549 CCL19Q99731 98 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 FOXB1Q99853 325 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 KATNB1Q9BVA0 655 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 CADM1Q9BY67 442 aaKnown RBP12.89□□□□□ -0.35
USP4-212ENST00000486549 NDEL1Q9GZM8 345 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 OBP2BQ9NPH6 170 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 STX18Q9P2W9 335 aaKnown RBP12.89□□□□□ -0.35
USP4-212ENST00000486549 IL20RAQ9UHF4 553 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 POU2F3Q9UKI9 436 aa12.89□□□□□ -0.35
USP4-212ENST00000486549 ZNF503-AS2A6NEH8 195 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 TNFRSF11BO00300 401 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 GSC2O15499 205 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 DHHO43323 396 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 IGHMP01871 453 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 CD79AP11912 226 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 ZNF26P17031 533 aaPredicted RBP12.88□□□□□ -0.35
USP4-212ENST00000486549 CD53P19397 219 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 RASSF2P50749 326 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 FMODQ06828 376 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 PPP1R8Q12972 351 aaKnown RBP12.88□□□□□ -0.35
USP4-212ENST00000486549 TAF11Q15544 211 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 LRFN4Q6PJG9 635 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 SLC22A25Q6T423 547 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 C20orf204Q6ZNR8 217 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 SPATA24Q86W54 205 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 LILRB1Q8NHL6 650 aaPredicted RBP12.88□□□□□ -0.35
USP4-212ENST00000486549 HTRA1Q92743 480 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 MCHR2Q969V1 340 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms