RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 FRRS1LQ9P0K9 344 aa11.04□□□□□ -0.64
PTPRF-212ENST00000477970 CTSFQ9UBX1 484 aa11.04□□□□□ -0.64
PTPRF-212ENST00000477970 NUFIP1Q9UHK0 495 aaKnown RBP11.04□□□□□ -0.64
PTPRF-212ENST00000477970 NUBP2Q9Y5Y2 271 aa11.04□□□□□ -0.64
PTPRF-212ENST00000477970 C7orf66A4D0T2 115 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 PRSS37A4D1T9 235 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 VSTM2BA6NLU5 285 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 AGFG1P52594 562 aaKnown RBP11.03□□□□□ -0.64
PTPRF-212ENST00000477970 MRPS10P82664 201 aaKnown RBP11.03□□□□□ -0.64
PTPRF-212ENST00000477970 LIPNQ5VXI9 398 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 FAM199XQ6PEV8 388 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-212ENST00000477970 NOXA1Q86UR1 476 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 AKAP7Q9P0M2 348 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-212ENST00000477970 V9GY05 133 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 LY6G6EA0A0G2JKS1 128 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 OR4C45A6NMZ5 311 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 C4orf47A7E2U8 309 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 FTCDNL1E5RQL4 147 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 INMT-MINDY4F8WBC2 141 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 PLPP3O14495 311 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 AKR7A3O95154 331 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 RAB40ALP0C0E4 278 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 SNRPBP14678 240 aaKnown RBP11.03□□□□□ -0.64
PTPRF-212ENST00000477970 ARSBP15848 533 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 ITPKBP27987 946 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 RRAS2P62070 204 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-212ENST00000477970 ROM1Q03395 351 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 CDK10Q15131 360 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 C1orf189Q5VU69 101 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 ZNF385CQ66K41 422 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-212ENST00000477970 LRRN1Q6UXK5 716 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 ZNF574Q6ZN55 896 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-212ENST00000477970 LANCL3Q6ZV70 420 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 YIPF7Q8N8F6 280 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 RAB40AQ8WXH6 277 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 TSSK2Q96PF2 358 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 SLITRK2Q9H156 845 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 SLC26A1Q9H2B4 701 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 FAM86C1Q9NVL1 165 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 B9D1Q9UPM9 204 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 R4GN57 208 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 U3KQA8 63 aa11.03□□□□□ -0.64
PTPRF-212ENST00000477970 IGLV3-32A0A0A0MS00 114 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 CENPBD1B2RD01 187 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 XKRYO14609 159 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 YKT6O15498 198 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 ZNF208O43345 1280 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 C17orf67Q0P5P2 114 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 FAM205BPQ63HN1 556 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 SLC22A10Q63ZE4 541 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 LGALS14Q8TCE9 139 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 TTC9Q92623 222 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 NSMAFQ92636 917 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 TP63Q9H3D4 680 aaPredicted RBP11.02□□□□□ -0.64
PTPRF-212ENST00000477970 DPAGT1Q9H3H5 408 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 CCDC86Q9H6F5 360 aaKnown RBP11.02□□□□□ -0.64
PTPRF-212ENST00000477970 AK6Q9Y3D8 172 aaKnown RBP11.02□□□□□ -0.64
PTPRF-212ENST00000477970 PCDHGA5Q9Y5G8 931 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 MPDZO75970 2070 aa11.02□□□□□ -0.64
PTPRF-212ENST00000477970 IGLV1-36A0A0B4J1U3 117 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 CDC14CA4D256 554 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 A8MU76 341 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 EEF1E1O43324 174 aaKnown RBP11.02□□□□□ -0.65
PTPRF-212ENST00000477970 LDOC1O95751 146 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-212ENST00000477970 OR8G3PP0DMU2 310 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 APOBEC1P41238 236 aaKnown RBP11.02□□□□□ -0.65
PTPRF-212ENST00000477970 SLC25A53Q5H9E4 307 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 TEX30Q5JUR7 227 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 PEAR1Q5VY43 1037 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-212ENST00000477970 LRRTM1Q86UE6 522 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 BPHLQ86WA6 291 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-212ENST00000477970 ZNF454Q8N9F8 522 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 ZNF417Q8TAU3 575 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 METTL21AQ8WXB1 218 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 DEDD2Q8WXF8 326 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 DCBLD2Q96PD2 775 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 OR8B4Q96RC9 309 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 COMMD4Q9H0A8 199 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 SRA1Q9HD15 236 aaKnown RBP11.02□□□□□ -0.65
PTPRF-212ENST00000477970 MUC6Q6W4X9 2439 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 IDSB3KWA1 339 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 ERP29P30040 261 aaKnown RBP11.02□□□□□ -0.65
PTPRF-212ENST00000477970 NKX2-5P52952 324 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-212ENST00000477970 KLF9Q13886 244 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-212ENST00000477970 LYSMD4Q5XG99 296 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 STAC2Q6ZMT1 411 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 DNM1P46Q6ZS02 220 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 OR2G2Q8NGZ5 317 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 AKAP1Q92667 903 aaKnown RBP eCLIP11.02□□□□□ -0.655e-7■■■□□ 15.9
PTPRF-212ENST00000477970 SCMH1Q96GD3 660 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 SYT4Q9H2B2 425 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 RANGRFQ9HD47 186 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-212ENST00000477970 EMC3Q9P0I2 261 aa11.02□□□□□ -0.65
PTPRF-212ENST00000477970 A6NIZ1 184 aa11.01□□□□□ -0.65
PTPRF-212ENST00000477970 ALOX12BO75342 701 aa11.01□□□□□ -0.65
PTPRF-212ENST00000477970 AHSA1O95433 338 aa11.01□□□□□ -0.65
PTPRF-212ENST00000477970 C1QBP02746 253 aa11.01□□□□□ -0.65
PTPRF-212ENST00000477970 MSX1P28360 303 aa11.01□□□□□ -0.65
PTPRF-212ENST00000477970 RAP1BP61224 184 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms