RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TLX2O43763 284 aaPredicted RBP12.18□□□□□ -0.46
UPF3A-204ENST00000475218 VIMP08670 466 aaKnown RBP12.18□□□□□ -0.46
UPF3A-204ENST00000475218 TSPAN19P0C672 248 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 PATE4P0C8F1 98 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 PGA4P0DJD7 388 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 PGA3P0DJD8 388 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 ZNF35P13682 527 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 SLC25A16P16260 332 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 CSNK1A1P48729 337 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 SNRPD2P62316 118 aaKnown RBP12.18□□□□□ -0.46
UPF3A-204ENST00000475218 VLDLRP98155 873 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 PIN1Q13526 163 aaPredicted RBP12.18□□□□□ -0.46
UPF3A-204ENST00000475218 C6orf52Q5T4I8 152 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 ZNF584Q8IVC4 421 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 SKA3Q8IX90 412 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 CCDC36Q8IYA8 594 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 OR6N1Q8NGY5 312 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 SH3GL1Q99961 368 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 ECSITQ9BQ95 431 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 YAE1D1Q9NRH1 226 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 CMTM6Q9NX76 183 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 GLTPQ9NZD2 209 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 FAM220BPB1ANY3 271 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 IGHV4-31P0DP07 118 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 CD79AP11912 226 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 PPOXP50336 477 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 HIST3H3Q16695 136 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 GSG1Q2KHT4 349 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 CYBRD1Q53TN4 286 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 HIPK1Q86Z02 1210 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 CDK20Q8IZL9 346 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 SVOPLQ8N434 492 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 POU5F2Q8N7G0 328 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 RASSF5Q8WWW0 418 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 RCN3Q96D15 328 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 SEPHS2Q99611 448 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 RIMS3Q9UJD0 308 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 POFUT2Q9Y2G5 429 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 MALRD1Q5VYJ5 2156 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 hCG_2039718K7EN88 272 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 MT-ND1P03886 318 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 BMP4P12644 408 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 FUT1P19526 365 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 NPR2P20594 1047 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 NR4A1P22736 598 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 KDELR2P33947 212 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 CAPZA2P47755 286 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 SNTB2Q13425 540 aaKnown RBP12.17□□□□□ -0.46
UPF3A-204ENST00000475218 MMEL1Q495T6 779 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 KRT80Q6KB66 452 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 DEF8Q6ZN54 512 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 PROX1Q92786 737 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 SLC25A44Q96H78 314 aaPredicted RBP12.17□□□□□ -0.46
UPF3A-204ENST00000475218 FOXN4Q96NZ1 517 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 VRK1Q99986 396 aaPredicted RBP12.17□□□□□ -0.46
UPF3A-204ENST00000475218 MRPL13Q9BYD1 178 aaKnown RBP12.17□□□□□ -0.46
UPF3A-204ENST00000475218 B3GAT2Q9NPZ5 323 aa12.17□□□□□ -0.46
UPF3A-204ENST00000475218 IGHV4-61A0A0C4DH41 118 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 RNF13O43567 381 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 PIP5K1CO60331 668 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 OR7A10O76100 309 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 OR5F1O95221 314 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 TP53P04637 393 aaPredicted RBP12.16□□□□□ -0.46
UPF3A-204ENST00000475218 CSF3P09919 207 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 NR4A2P43354 598 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 GIPRP48546 466 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 RPL18Q07020 188 aaKnown RBP12.16□□□□□ -0.46
UPF3A-204ENST00000475218 DAG1Q14118 895 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 FXNQ16595 210 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 C8orf82Q6P1X6 216 aaPredicted RBP12.16□□□□□ -0.46
UPF3A-204ENST00000475218 ERICH5Q6P6B1 374 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 MICU2Q8IYU8 434 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 MOSPD2Q8NHP6 518 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 LIPHQ8WWY8 451 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 TMEM38BQ9NVV0 291 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 BAG5Q9UL15 447 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 A4GNTQ9UNA3 340 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 SNX13Q9Y5W8 968 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 CAPN7Q9Y6W3 813 aa12.16□□□□□ -0.46
UPF3A-204ENST00000475218 A8MV72 311 aaPredicted RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 OR6A2O95222 327 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 IGF2P01344 180 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 F13BP05160 661 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 USF1P22415 310 aaPredicted RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 AQP2P41181 271 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 RBM34P42696 430 aaKnown RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 PTDSS1P48651 473 aaKnown RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 TAS2R41P59536 307 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 RAB1AP62820 205 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 RAB39AQ14964 217 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 MAPRE2Q15555 327 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 LRRC23Q53EV4 343 aaPredicted RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 PIWIL3Q7Z3Z3 882 aaKnown RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 SPATA21Q7Z572 469 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 NANOGNBQ7Z5D8 188 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 TREML1Q86YW5 311 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 SLC15A3Q8IY34 581 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 SLC22A24Q8N4F4 322 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 IL17RDQ8NFM7 739 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 OR2T12Q8NG77 320 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms