RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 UBE2NLQ5JXB2 153 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 ADGRG3Q86Y34 549 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 OR2G2Q8NGZ5 317 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 EXOSC3Q9NQT5 275 aaKnown RBP17.25■□□□□ 0.35
VIM-203ENST00000469543 PI4KAP42356 2102 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 ANKRD34BA5PLL1 514 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 ZNF593O00488 134 aaPredicted RBP17.25■□□□□ 0.35
VIM-203ENST00000469543 GPRIN2O60269 458 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 SLC16A7O60669 478 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 ZNF780AO75290 641 aaPredicted RBP17.25■□□□□ 0.35
VIM-203ENST00000469543 BGLAPP02818 100 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 S100A1P23297 94 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 GALNSP34059 522 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 SLC25A1P53007 311 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 GPLD1P80108 840 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 NDUFA5Q16718 116 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 Q499Y3 187 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 BICRALQ6AI39 1079 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 PWWP2BQ6NUJ5 590 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 FAM220AQ7Z4H9 259 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 TMPRSS12Q86WS5 348 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 GLB1L2Q8IW92 636 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 OR2T4Q8NH00 348 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 OR1F2PQ96R84 312 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 CDCP1Q9H5V8 836 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 SHISA8B8ZZ34 492 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 TIAF1O95411 115 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 DHFRP00374 187 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 PNPP00491 289 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 NUDT1P36639 197 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 ZNF676Q8N7Q3 588 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 RPS4Y2Q8TD47 263 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 SMIM4Q8WVI0 70 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 GIMAP1Q8WWP7 306 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 METTL21AQ8WXB1 218 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 PELOQ9BRX2 385 aaKnown RBP17.24■□□□□ 0.35
VIM-203ENST00000469543 MMACHCQ9Y4U1 282 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 OR4C45A6NMZ5 311 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 OPN1LWP04000 364 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 CDK2P24941 298 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 CAPZA2P47755 286 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 PTH2RP49190 550 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 INSM1Q01101 510 aaPredicted RBP17.24■□□□□ 0.35
VIM-203ENST00000469543 SQSTM1Q13501 440 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 EEF1A1P5Q5VTE0 462 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 OR1N1Q8NGS0 311 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 SNAPC3Q92966 411 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.24■□□□□ 0.35
VIM-203ENST00000469543 SLC23A1Q9UHI7 598 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 SUSD5O60279 629 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 SLC25A12O75746 678 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 TOXO94900 526 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 TACSTD2P09758 323 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 CTLA4P16410 223 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 FBXW4P57775 412 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 BTG1P62324 171 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 PITPNAQ00169 270 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 GSG1Q2KHT4 349 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 SLC6A19Q695T7 634 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 TIGD3Q6B0B8 471 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 SIX5Q8N196 739 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 CCDC74AQ96AQ1 378 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 ARL5BQ96KC2 179 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 GAL3ST1Q99999 423 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 OR10A4Q9H209 315 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 OR51J1Q9H342 316 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 MOKQ9UQ07 419 aa17.24■□□□□ 0.35
VIM-203ENST00000469543 SDK2Q58EX2 2172 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 ALG1L2C9J202 215 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 DCTDP32321 178 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 EFNB2P52799 333 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 BIKQ13323 160 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 PRR23CQ6ZRP0 262 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 PLXDC1Q8IUK5 500 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 D2HGDHQ8N465 521 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 OR11G2Q8NGC1 345 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 DAZLQ92904 295 aaKnown RBP17.23■□□□□ 0.35
VIM-203ENST00000469543 INTS14Q96SY0 518 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 UBE2ZQ9H832 354 aaPredicted RBP17.23■□□□□ 0.35
VIM-203ENST00000469543 COPS7AQ9UBW8 275 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 TMED7-TICAM2A0A0A6YYA0 188 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 ERVH48-1M5A8F1 160 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 TXNDC12O95881 172 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 DCNP07585 359 aaKnown RBP17.23■□□□□ 0.35
VIM-203ENST00000469543 APEHP13798 732 aaKnown RBP17.23■□□□□ 0.35
VIM-203ENST00000469543 HTR2BP41595 481 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 KIR3DL2P43630 455 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 TNK1Q13470 666 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 SMAD2Q15796 467 aaKnown RBP17.23■□□□□ 0.35
VIM-203ENST00000469543 WDR38Q5JTN6 314 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 TSSK4Q6SA08 328 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 CADM4Q8NFZ8 388 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 ZNF501Q96CX3 271 aaPredicted RBP17.23■□□□□ 0.35
VIM-203ENST00000469543 NDEL1Q9GZM8 345 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 ELOVL3Q9HB03 270 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 MRPL22Q9NWU5 206 aaKnown RBP17.23■□□□□ 0.35
VIM-203ENST00000469543 VDAC3Q9Y277 283 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 TMED7Q9Y3B3 224 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 HRH3Q9Y5N1 445 aa17.23■□□□□ 0.35
VIM-203ENST00000469543 CEP192Q8TEP8 1941 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms