RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 FOXD3Q9UJU5 478 aaPredicted RBP10.25□□□□□ -0.77
SCN9A-204ENST00000452182 PROCRQ9UNN8 238 aa10.25□□□□□ -0.77
SCN9A-204ENST00000452182 IER3IP1Q9Y5U9 82 aa10.25□□□□□ -0.77
SCN9A-204ENST00000452182 WIPF3A6NGB9 483 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 SLC43A1O75387 559 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 IGHG1P01857 330 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 PGA4P0DJD7 388 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 PGA3P0DJD8 388 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 NR2C1P13056 603 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 ACADSP16219 412 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 BMP5P22003 454 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 ACVR1BP36896 505 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 TOP3AQ13472 1001 aaPredicted RBP10.24□□□□□ -0.77
SCN9A-204ENST00000452182 MELKQ14680 651 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 PTGES3Q15185 160 aaKnown RBP10.24□□□□□ -0.77
SCN9A-204ENST00000452182 HIST3H3Q16695 136 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 LRRC36Q1X8D7 754 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 SLC25A35Q3KQZ1 300 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 LIX1LQ8IVB5 337 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 C20orf196Q8IYI0 205 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 ZNF100Q8IYN0 542 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 ZNF808Q8N4W9 903 aaPredicted RBP10.24□□□□□ -0.77
SCN9A-204ENST00000452182 OR4Q3Q8NH05 313 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 FNDC8Q8TC99 324 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 ZNF566Q969W8 418 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 ZNF570Q96NI8 536 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 ERMAPQ96PL5 475 aaPredicted RBP10.24□□□□□ -0.77
SCN9A-204ENST00000452182 SNX18Q96RF0 628 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 ALG12Q9BV10 488 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 SLCO5A1Q9H2Y9 848 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 VCXQ9H320 206 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 C12orf49Q9H741 205 aa10.24□□□□□ -0.77
SCN9A-204ENST00000452182 SMPD3Q9NY59 655 aaPredicted RBP10.24□□□□□ -0.77
SCN9A-204ENST00000452182 TEX13CA0A0J9YWL9 993 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 ZAR1LA6NP61 321 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 A8MXE2 369 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 E9PQ18 207 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 H0YJX3 145 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 XKRYO14609 159 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 TRMUO75648 421 aaKnown RBP10.23□□□□□ -0.77
SCN9A-204ENST00000452182 HMGN1P05114 100 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 EDNRAP25101 427 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 POU1F1P28069 291 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 NOS3P29474 1203 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 GRK5P34947 590 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 PCYT1AP49585 367 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 MYBPC1Q00872 1141 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 RUNX1T1Q06455 604 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 CAMK2DQ13557 499 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 KRR1Q13601 381 aaKnown RBP10.23□□□□□ -0.77
SCN9A-204ENST00000452182 GINS1Q14691 196 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 STK11Q15831 433 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 PGGHGQ32M88 737 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 MESTQ5EB52 335 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 ZNF362Q5T0B9 420 aaPredicted RBP10.23□□□□□ -0.77
SCN9A-204ENST00000452182 TSPO2Q5TGU0 170 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 FBXW9Q5XUX1 488 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 Q6ZT83 130 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 BEND4Q6ZU67 534 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 WDFY1Q8IWB7 410 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 PLPP7Q8NBV4 271 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 RELL2Q8NC24 303 aaPredicted RBP10.23□□□□□ -0.77
SCN9A-204ENST00000452182 NRG4Q8WWG1 115 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 ITLN2Q8WWU7 325 aaPredicted RBP10.23□□□□□ -0.77
SCN9A-204ENST00000452182 TMEM54Q969K7 222 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 TEX12Q9BXU0 123 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 GRIP2Q9C0E4 1043 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 RASSF4Q9H2L5 321 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 VCX3BQ9H321 246 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 SLC7A10Q9NS82 523 aa10.23□□□□□ -0.77
SCN9A-204ENST00000452182 FREM1Q5H8C1 2179 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 CLEC18AA5D8T8 446 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 RPL36A-HNRNPH2H7BZ11 118 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 DLGAP1O14490 977 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 ZG16O60844 167 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 SMNDC1O75940 238 aaKnown RBP eCLIP10.22□□□□□ -0.77
SCN9A-204ENST00000452182 HIST1H1CP16403 213 aaKnown RBP10.22□□□□□ -0.77
SCN9A-204ENST00000452182 EPHA2P29317 976 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 PTDSS1P48651 473 aaKnown RBP10.22□□□□□ -0.77
SCN9A-204ENST00000452182 CSNK1A1P48729 337 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 ZNF133P52736 654 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-204ENST00000452182 FBXL19-AS1Q494R0 122 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 THEM4Q5T1C6 240 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 SLX4IPQ5VYV7 408 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 ACSM5Q6NUN0 579 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 CLEC18BQ6UXF7 455 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 ABHD12BQ7Z5M8 362 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-204ENST00000452182 GABRG1Q8N1C3 465 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 GALNT4Q8N4A0 578 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 ZNF610Q8N9Z0 462 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 CLEC18CQ8NCF0 446 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 NOXO1Q8NFA2 376 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 CA5BP1Q8WTZ4 195 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 HDAC2Q92769 488 aaKnown RBP10.22□□□□□ -0.77
SCN9A-204ENST00000452182 RASD2Q96D21 266 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 NMD3Q96D46 503 aaKnown RBP10.22□□□□□ -0.77
SCN9A-204ENST00000452182 PRRG3Q9BZD7 231 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 OPN3Q9H1Y3 402 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-204ENST00000452182 TOR3AQ9H497 397 aa10.22□□□□□ -0.77
SCN9A-204ENST00000452182 CMC2Q9NRP2 79 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms