RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 FBXO9Q9UK97 447 aaPredicted RBP16.8■□□□□ 0.28
USP40-207ENST00000450940 RNF13O43567 381 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 CD5LO43866 347 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 CCDC22O60826 627 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 COX4I1P13073 169 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 SLC25A16P16260 332 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 ZNF14P17017 642 aaPredicted RBP16.79■□□□□ 0.28
USP40-207ENST00000450940 THBS4P35443 961 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 UGT2B15P54855 530 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 LOXL1Q08397 574 aaPredicted RBP16.79■□□□□ 0.28
USP40-207ENST00000450940 HIST3H3Q16695 136 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 C8orf82Q6P1X6 216 aaPredicted RBP16.79■□□□□ 0.28
USP40-207ENST00000450940 DEF8Q6ZN54 512 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 TMEM255BQ8WV15 326 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 TMEM239Q8WW34 195 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 NANOS1Q8WY41 292 aaKnown RBP16.79■□□□□ 0.28
USP40-207ENST00000450940 FAM168AQ92567 244 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 ZNF566Q969W8 418 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 SEPHS2Q99611 448 aa16.79■□□□□ 0.28
USP40-207ENST00000450940 HTR3EA5X5Y0 456 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 CENPBD1B2RD01 187 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 ATP8B1O43520 1251 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 TLX2O43763 284 aaPredicted RBP16.78■□□□□ 0.28
USP40-207ENST00000450940 SHOX2O60902 331 aaPredicted RBP16.78■□□□□ 0.28
USP40-207ENST00000450940 OR7A10O76100 309 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 PGA4P0DJD7 388 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 PGA3P0DJD8 388 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 UMPSP11172 480 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 ZNF35P13682 527 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 B4GALT1P15291 398 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 FUT1P19526 365 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 CAPZA2P47755 286 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 PPOXP50336 477 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 NPRL3Q12980 569 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 NANOGNBQ7Z5D8 188 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 PFN4Q8NHR9 129 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 SGTBQ96EQ0 304 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 SORCS2Q96PQ0 1159 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 DOK1Q99704 481 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 HOPXQ9BPY8 73 aaPredicted RBP16.78■□□□□ 0.28
USP40-207ENST00000450940 MRPL13Q9BYD1 178 aaKnown RBP16.78■□□□□ 0.28
USP40-207ENST00000450940 C20orf141Q9NUB4 165 aa16.78■□□□□ 0.28
USP40-207ENST00000450940 TMEM129A0AVI4 362 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 VSTM5A8MXK1 200 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 BLOC1S5-TXNDC5H3BN57 136 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 CRLF1O75462 422 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 BCL10O95999 233 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 TP53P04637 393 aaPredicted RBP16.77■□□□□ 0.28
USP40-207ENST00000450940 CD79AP11912 226 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 NPR2P20594 1047 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 NR4A1P22736 598 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 RAB1AP62820 205 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 RPL18Q07020 188 aaKnown RBP16.77■□□□□ 0.28
USP40-207ENST00000450940 LRRC23Q53EV4 343 aaPredicted RBP16.77■□□□□ 0.28
USP40-207ENST00000450940 VHLLQ6RSH7 139 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 HACD2Q6Y1H2 254 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 PRIMA1Q86XR5 153 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 TREML1Q86YW5 311 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 SKA3Q8IX90 412 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 TNFRSF13CQ96RJ3 184 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 FBXL3Q9UKT7 428 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 A4GNTQ9UNA3 340 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 MED31Q9Y3C7 131 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 FKBP7Q9Y680 259 aa16.77■□□□□ 0.28
USP40-207ENST00000450940 NPIPB13A6NJU9 1138 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 VWC2LB2RUY7 222 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 NPIPB4C9JG80 1138 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 DHHO43323 396 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 GPRIN2O60269 458 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 ENTPD5O75356 428 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 LY6HO94772 140 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 UBL3O95164 117 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 ZNF133P52736 654 aaPredicted RBP16.76■□□□□ 0.27
USP40-207ENST00000450940 LIPEQ05469 1076 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 PIGFQ07326 219 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 ST3GAL3Q11203 375 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 DAG1Q14118 895 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 MELKQ14680 651 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 NRN1LQ496H8 165 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 SLC22A24Q8N4F4 322 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 LZICQ8WZA0 190 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 MS4A3Q96HJ5 214 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 TPD52L3Q96J77 140 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 PRRC1Q96M27 445 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 EFCAB1Q9HAE3 211 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 TMEM38BQ9NVV0 291 aa16.76■□□□□ 0.27
USP40-207ENST00000450940 GMPR2Q9P2T1 348 aaKnown RBP16.76■□□□□ 0.27
USP40-207ENST00000450940 A0A1W2PRG6 482 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 NDUFS8O00217 210 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 NME4O00746 187 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 IGHG1P01857 330 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 QDPRP09417 244 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 OR8G3PP0DMU2 310 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 AQP2P41181 271 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 GIPRP48546 466 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 VLDLRP98155 873 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 RUNX1T1Q06455 604 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 TMEM249Q2WGJ8 235 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 FGFBP3Q8TAT2 258 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 ASB10Q8WXI3 467 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms