RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 SLC35A2P78381 396 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 SF3B4Q15427 424 aaKnown RBP eCLIP17.13■□□□□ 0.339e-7■■■□□ 18.8
RPS28-202ENST00000449223 SLC35D3Q5M8T2 416 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 ZBTB46Q86UZ6 589 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 TMEM123Q8N131 208 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 BBS1Q8NFJ9 593 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 FNDC8Q8TC99 324 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 KISS1RQ969F8 398 aaPredicted RBP17.13■□□□□ 0.33
RPS28-202ENST00000449223 NMD3Q96D46 503 aaKnown RBP17.13■□□□□ 0.33
RPS28-202ENST00000449223 SIGLEC11Q96RL6 698 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 SCN3BQ9NY72 215 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 HAO2Q9NYQ3 351 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 PSORS1C1Q9UIG5 152 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 FKBP7Q9Y680 259 aa17.13■□□□□ 0.33
RPS28-202ENST00000449223 SLC22A20A6NK97 555 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 TRMUO75648 421 aaKnown RBP17.12■□□□□ 0.33
RPS28-202ENST00000449223 IGHG1P01857 330 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 DBTP11182 482 aaKnown RBP17.12■□□□□ 0.33
RPS28-202ENST00000449223 SPI1P17947 270 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 CDH11P55287 796 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 ZNF91Q05481 1191 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 EEF1A1P5Q5VTE0 462 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 GTF2IRD2BQ6EKJ0 949 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 MEPCEQ7L2J0 689 aaKnown RBP17.12■□□□□ 0.33
RPS28-202ENST00000449223 GTF2IRD2Q86UP8 949 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 IPCEF1Q8WWN9 437 aaPredicted RBP17.12■□□□□ 0.33
RPS28-202ENST00000449223 CNTNAP3BQ96NU0 1288 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 OR2M2Q96R28 347 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 CNTNAP3Q9BZ76 1288 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 SYT4Q9H2B2 425 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 MED20Q9H944 212 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 CALHM2Q9HA72 323 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 EMC3Q9P0I2 261 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 WARS2Q9UGM6 360 aaKnown RBP17.12■□□□□ 0.33
RPS28-202ENST00000449223 MOKQ9UQ07 419 aa17.12■□□□□ 0.33
RPS28-202ENST00000449223 CD8B2A6NJW9 211 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 MRPS14O60783 128 aaKnown RBP17.11■□□□□ 0.33
RPS28-202ENST00000449223 WDR1O75083 606 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 NR2C1P13056 603 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 GABRA1P14867 456 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 ZNF133P52736 654 aaPredicted RBP17.11■□□□□ 0.33
RPS28-202ENST00000449223 NUDT6P53370 316 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 CLDN17P56750 224 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 ACSF3Q4G176 576 aaPredicted RBP17.11■□□□□ 0.33
RPS28-202ENST00000449223 NOXO1Q8NFA2 376 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 OR2T4Q8NH00 348 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 TEAD3Q99594 435 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 EMC6Q9BV81 110 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 RACGAP1Q9H0H5 632 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 CCNB1IP1Q9NPC3 277 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 RPRD1BQ9NQG5 326 aaKnown RBP17.11■□□□□ 0.33
RPS28-202ENST00000449223 GLRX2Q9NS18 164 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 ASF1BQ9NVP2 202 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 PAK1IP1Q9NWT1 392 aaPredicted RBP17.11■□□□□ 0.33
RPS28-202ENST00000449223 H2AFY2Q9P0M6 372 aaPredicted RBP17.11■□□□□ 0.33
RPS28-202ENST00000449223 FOXD3Q9UJU5 478 aaPredicted RBP17.11■□□□□ 0.33
RPS28-202ENST00000449223 CCDC182A6NF36 153 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 EFCAB10A6NFE3 127 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 ZNF726A6NNF4 738 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 FAM20BO75063 409 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 TGM6O95932 706 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 RPSAP08865 295 aaKnown RBP17.11■□□□□ 0.33
RPS28-202ENST00000449223 HOXD4P09016 255 aaPredicted RBP17.11■□□□□ 0.33
RPS28-202ENST00000449223 CRABP1P29762 137 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 MTNR1AP48039 350 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 CENPAP49450 140 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 LGALS3BPQ08380 585 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 APOFQ13790 326 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 GGTLC2Q14390 218 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 THEM4Q5T1C6 240 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 NSUN5P2Q63ZY6 315 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 OR6V1Q8N148 313 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 FAM57AQ8TBR7 257 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 GGHQ92820 318 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 WNT2BQ93097 391 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 INTS12Q96CB8 462 aaKnown RBP17.11■□□□□ 0.33
RPS28-202ENST00000449223 PRRG4Q9BZD6 226 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 AMBNQ9NP70 447 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 ASB6Q9NWX5 421 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 ZNF835Q9Y2P0 537 aa17.11■□□□□ 0.33
RPS28-202ENST00000449223 MED12LQ86YW9 2145 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 FIGNL2A6NMB9 653 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 H7C1C5 153 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 DCTN6O00399 190 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 YES1P07947 543 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 CLUP10909 449 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 LCN6P62502 163 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 RAB40BQ12829 278 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 LY6DQ14210 128 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 PRR30Q53SZ7 412 aaPredicted RBP17.1■□□□□ 0.33
RPS28-202ENST00000449223 LINC01590Q5TEZ4 76 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 ZNF540Q8NDQ6 660 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 OR9Q1Q8NGQ5 310 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 TMEM54Q969K7 222 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 GMPPAQ96IJ6 420 aaPredicted RBP17.1■□□□□ 0.33
RPS28-202ENST00000449223 NUAK2Q9H093 628 aa17.1■□□□□ 0.33
RPS28-202ENST00000449223 IGLV1-36A0A0B4J1U3 117 aa17.09■□□□□ 0.33
RPS28-202ENST00000449223 IRGMA1A4Y4 181 aa17.09■□□□□ 0.33
RPS28-202ENST00000449223 TRIM64CA6NLI5 447 aa17.09■□□□□ 0.33
RPS28-202ENST00000449223 SMNDC1O75940 238 aaKnown RBP eCLIP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms