RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 TPOP07202 933 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 PGA4P0DJD7 388 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 PGA3P0DJD8 388 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 PRR23D2P0DMB1 279 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-204ENST00000414963 NTF4P34130 210 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 NFATC3Q12968 1075 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 TMED1Q13445 227 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 MELKQ14680 651 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 C1orf185Q5T7R7 199 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 OR2A2Q6IF42 318 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 PLBD1Q6P4A8 553 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 LEG1Q6P5S2 330 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 PLXDC2Q6UX71 529 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 ZBTB46Q86UZ6 589 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 CD163Q86VB7 1156 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 DOLPP1Q86YN1 238 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 MCEMP1Q8IX19 187 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 CYB561A3Q8NBI2 242 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 SDR9C7Q8NEX9 313 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 MBD3L2Q8NHZ7 208 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-204ENST00000414963 CNIH3Q8TBE1 160 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 RFKQ969G6 155 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 TMEM54Q969K7 222 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 ZNF566Q969W8 418 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 ZNF582Q96NG8 517 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-204ENST00000414963 NR1H4Q96RI1 486 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-204ENST00000414963 EMC6Q9BV81 110 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 TP63Q9H3D4 680 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-204ENST00000414963 AASSQ9UDR5 926 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 FAM215AQ9Y5M1 114 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 BSNQ9UPA5 3926 aa12.65□□□□□ -0.39
SF3B1-204ENST00000414963 FAM183AA6NL82 134 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 PRODHO43272 600 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 CRHP06850 196 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 CCDC159P0C7I6 412 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 SLC2A5P22732 501 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 HTR1FP30939 366 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 TIMP3P35625 211 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 ZNF133P52736 654 aaPredicted RBP12.64□□□□□ -0.39
SF3B1-204ENST00000414963 RBM48Q5RL73 367 aaKnown RBP12.64□□□□□ -0.39
SF3B1-204ENST00000414963 THEM4Q5T1C6 240 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 RPTNQ6XPR3 784 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 SEM1Q6ZVN7 128 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 AAED1Q7RTV5 226 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 P4HA3Q7Z4N8 544 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 GID4Q8IVV7 300 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 TUSC5Q8IXB3 177 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 C20orf196Q8IYI0 205 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 ZFP3Q96NJ6 502 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 HCAR1Q9BXC0 346 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 MRPS18AQ9NVS2 196 aaKnown RBP12.64□□□□□ -0.39
SF3B1-204ENST00000414963 DNAJC27Q9NZQ0 273 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 FOXD3Q9UJU5 478 aaPredicted RBP12.64□□□□□ -0.39
SF3B1-204ENST00000414963 MOKQ9UQ07 419 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 NOSIPQ9Y314 301 aaKnown RBP12.64□□□□□ -0.39
SF3B1-204ENST00000414963 FKBP7Q9Y680 259 aa12.64□□□□□ -0.39
SF3B1-204ENST00000414963 CACNA1BQ00975 2339 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 OR6C65A6NJZ3 312 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 SNTNA6NMZ2 147 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 SLC43A1O75387 559 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 NR2C1P13056 603 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 SPI1P17947 270 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 CRABP1P29762 137 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 CENPAP49450 140 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 SELENOPP49908 381 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 CHN2P52757 468 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 LGALS3BPQ08380 585 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 CAMK2DQ13557 499 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 SMN1Q16637 294 aaKnown RBP12.63□□□□□ -0.39
SF3B1-204ENST00000414963 EIF2S3LQ2VIR3 472 aaKnown RBP12.63□□□□□ -0.39
SF3B1-204ENST00000414963 SLC35D3Q5M8T2 416 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 RIPPLY2Q5TAB7 128 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 NIPAL3Q6P499 406 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 MEPCEQ7L2J0 689 aaKnown RBP12.63□□□□□ -0.39
SF3B1-204ENST00000414963 BCDIN3DQ7Z5W3 292 aaKnown RBP12.63□□□□□ -0.39
SF3B1-204ENST00000414963 OR6V1Q8N148 313 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 C9orf106Q8NAJ2 232 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 NOXO1Q8NFA2 376 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 BBS1Q8NFJ9 593 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 OR2T4Q8NH00 348 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 ZNF775Q96BV0 537 aaPredicted RBP12.63□□□□□ -0.39
SF3B1-204ENST00000414963 RBP7Q96R05 134 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 TEAD3Q99594 435 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 LINC00470Q9BZP3 86 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 SYT4Q9H2B2 425 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 MED20Q9H944 212 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 HAO2Q9NYQ3 351 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 H2AFY2Q9P0M6 372 aaPredicted RBP12.63□□□□□ -0.39
SF3B1-204ENST00000414963 WARS2Q9UGM6 360 aaKnown RBP12.63□□□□□ -0.39
SF3B1-204ENST00000414963 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.63□□□□□ -0.39
SF3B1-204ENST00000414963 KIAA1549Q9HCM3 1950 aa12.63□□□□□ -0.39
SF3B1-204ENST00000414963 IGLV1-36A0A0B4J1U3 117 aa12.62□□□□□ -0.39
SF3B1-204ENST00000414963 CCDC182A6NF36 153 aa12.62□□□□□ -0.39
SF3B1-204ENST00000414963 TRIM64A6NGJ6 449 aa12.62□□□□□ -0.39
SF3B1-204ENST00000414963 SLC22A31A6NKX4 558 aa12.62□□□□□ -0.39
SF3B1-204ENST00000414963 H7C1C5 153 aa12.62□□□□□ -0.39
SF3B1-204ENST00000414963 MRPL33O75394 65 aaKnown RBP12.62□□□□□ -0.39
SF3B1-204ENST00000414963 CRHBPP24387 322 aa12.62□□□□□ -0.39
SF3B1-204ENST00000414963 AGTR1P30556 359 aa12.62□□□□□ -0.39
SF3B1-204ENST00000414963 FMO3P31513 532 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms