RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 MUC15Q8N387 334 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 FAM86B1Q8N7N1 296 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 CDRT15Q96T59 188 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 FOXB1Q99853 325 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 KCNS3Q9BQ31 491 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 KATNB1Q9BVA0 655 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 GRIP2Q9C0E4 1043 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 GSX1Q9H4S2 264 aaPredicted RBP12.89□□□□□ -0.35
LIMS4-201ENST00000413601 INIPQ9NRY2 104 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 CBLN4Q9NTU7 201 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 DCAF13Q9NV06 445 aaKnown RBP12.89□□□□□ -0.35
LIMS4-201ENST00000413601 ENPP4Q9Y6X5 453 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 VPS13CQ709C8 3753 aa12.89□□□□□ -0.35
LIMS4-201ENST00000413601 ARFGEF3Q5TH69 2177 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 TRIM64A6NGJ6 449 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 TRIM64BA6NI03 449 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 MCIDASD6RGH6 385 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 NDUFS7O75251 213 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 HLA-HP01893 362 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 CRYAAP02489 173 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 PGA4P0DJD7 388 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 PGA3P0DJD8 388 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 HSD17B1P14061 328 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 CLRN1P58418 232 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 MXRA7P84157 204 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 MYBPC1Q00872 1141 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 PRKCDQ05655 676 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 RUNX1T1Q06455 604 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 PIGFQ07326 219 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 NPRL3Q12980 569 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 C3orf36Q3SXR2 165 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 SAMD4BQ5PRF9 694 aaKnown RBP12.88□□□□□ -0.35
LIMS4-201ENST00000413601 GKAP1Q5VSY0 366 aaPredicted RBP12.88□□□□□ -0.35
LIMS4-201ENST00000413601 C11orf71Q6IPW1 123 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 ZNF544Q6NX49 715 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 ZNF730Q6ZMV8 503 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 ZNF627Q7L945 461 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 CYP4Z1Q86W10 505 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 CCDC36Q8IYA8 594 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 DEFB107AQ8IZN7 70 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 CIARTQ8N365 385 aaPredicted RBP12.88□□□□□ -0.35
LIMS4-201ENST00000413601 FITM2Q8N6M3 262 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 FAM169BQ8N8A8 192 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 SYT14Q8NB59 555 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 ASB10Q8WXI3 467 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 ACOT11Q8WXI4 607 aaPredicted RBP12.88□□□□□ -0.35
LIMS4-201ENST00000413601 C18orf12Q96KH6 178 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 GORASP2Q9H8Y8 452 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 NMNAT1Q9HAN9 279 aaPredicted RBP12.88□□□□□ -0.35
LIMS4-201ENST00000413601 MOV10Q9HCE1 1003 aaKnown RBP12.88□□□□□ -0.35
LIMS4-201ENST00000413601 B3GNT2Q9NY97 397 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 CD300AQ9UGN4 299 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 GDF2Q9UK05 429 aaPredicted RBP12.88□□□□□ -0.35
LIMS4-201ENST00000413601 SAMD4AQ9UPU9 718 aaKnown RBP12.88□□□□□ -0.35
LIMS4-201ENST00000413601 V9GYQ6 96 aa12.88□□□□□ -0.35
LIMS4-201ENST00000413601 A0A087WUU8 490 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 HTR3EA5X5Y0 456 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 H7C1Q1 480 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 hCG_2039718K7EN88 272 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 FAM107AO95990 144 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 IGHV4-39P01824 125 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 IGHG1P01857 330 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 QDPRP09417 244 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 SAGP10523 405 aaPredicted RBP12.87□□□□□ -0.35
LIMS4-201ENST00000413601 CD79AP11912 226 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 ACADSP16219 412 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 CALCRP30988 508 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 APOBEC3AP31941 199 aaPredicted RBP12.87□□□□□ -0.35
LIMS4-201ENST00000413601 ARR3P36575 388 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 DAP3P51398 398 aaKnown RBP12.87□□□□□ -0.35
LIMS4-201ENST00000413601 KRT72Q14CN4 511 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 GSG1Q2KHT4 349 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 ALG10Q5BKT4 473 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 C16orf89Q6UX73 402 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 C7orf34Q96L11 122 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 ZNF347Q96SE7 839 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 SMR3AQ99954 134 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 BDH2Q9BUT1 245 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 CACNG6Q9BXT2 260 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 MRPL13Q9BYD1 178 aaKnown RBP12.87□□□□□ -0.35
LIMS4-201ENST00000413601 NOX3Q9HBY0 568 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 ZNF224Q9NZL3 707 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 NDUFAF4Q9P032 175 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 MAGEL2Q9UJ55 1249 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 HIF3AQ9Y2N7 669 aa12.87□□□□□ -0.35
LIMS4-201ENST00000413601 FAM32AQ9Y421 112 aaKnown RBP12.87□□□□□ -0.35
LIMS4-201ENST00000413601 CR1P17927 2039 aa12.86□□□□□ -0.35
LIMS4-201ENST00000413601 CHD3Q12873 2000 aaKnown RBP12.86□□□□□ -0.35
LIMS4-201ENST00000413601 TRAV27A0A087WT01 109 aa12.86□□□□□ -0.35
LIMS4-201ENST00000413601 EFCAB9A8MZ26 197 aa12.86□□□□□ -0.35
LIMS4-201ENST00000413601 SMAD7O15105 426 aaKnown RBP12.86□□□□□ -0.35
LIMS4-201ENST00000413601 DHHO43323 396 aa12.86□□□□□ -0.35
LIMS4-201ENST00000413601 TRMUO75648 421 aaKnown RBP12.86□□□□□ -0.35
LIMS4-201ENST00000413601 DIRAS1O95057 198 aa12.86□□□□□ -0.35
LIMS4-201ENST00000413601 INHBBP09529 407 aa12.86□□□□□ -0.35
LIMS4-201ENST00000413601 ACVR1BP36896 505 aa12.86□□□□□ -0.35
LIMS4-201ENST00000413601 GPR4P46093 362 aa12.86□□□□□ -0.35
LIMS4-201ENST00000413601 VLDLRP98155 873 aa12.86□□□□□ -0.35
LIMS4-201ENST00000413601 TOP3AQ13472 1001 aaPredicted RBP12.86□□□□□ -0.35
LIMS4-201ENST00000413601 FHL1Q13642 323 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms