RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 BCL10O95999 233 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 NR2C1P13056 603 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 NPR2P20594 1047 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 PTNP21246 168 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 CAPZA2P47755 286 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 PPOXP50336 477 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 CRYBA2P53672 197 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 BIDP55957 195 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 ST3GAL3Q11203 375 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 ADIPOQQ15848 244 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 ANKDD1AQ495B1 522 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 CARD17Q5XLA6 110 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 WDR88Q6ZMY6 472 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 FOXB1Q99853 325 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 PRSS27Q9BQR3 290 aa12.61□□□□□ -0.39
NIF3L1-205ENST00000409588 LOC390937A0A1W2PQ73 354 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 NPIPB13A6NJU9 1138 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 NPIPB4C9JG80 1138 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 INAFM1C9JVW0 142 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 LRRN3E7EW58 273 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 C11orf98E9PRG8 122 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 BLOC1S5-TXNDC5H3BN57 136 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 CRLF1O75462 422 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 PTHP01270 115 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 IGHG1P01857 330 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 OR8G3PP0DMU2 310 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 UMPSP11172 480 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 FUT1P19526 365 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 NR4A1P22736 598 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 PCSK6P29122 969 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 LSP1P33241 339 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 PDLIM4P50479 330 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 IDH3GP51553 393 aaPredicted RBP12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 RAB1AP62820 205 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 DAG1Q14118 895 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 TAF11Q15544 211 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 CYBRD1Q53TN4 286 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 PHYHD1Q5SRE7 291 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 CGB2Q6NT52 195 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 SLC46A3Q7Z3Q1 461 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 NANOGNBQ7Z5D8 188 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 MDP1Q86V88 176 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 MICU2Q8IYU8 434 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 C10orf105Q8TEF2 133 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 TMEM239Q8WW34 195 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 NEU4Q8WWR8 484 aaPredicted RBP12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 C1orf198Q9H425 327 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 MEPEQ9NQ76 525 aaPredicted RBP12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 MED31Q9Y3C7 131 aa12.6□□□□□ -0.39
NIF3L1-205ENST00000409588 TLN2Q9Y4G6 2542 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 IGHV4-30-2A0A087WSY4 118 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 IGHV2OR16-5A0A0B4J2B6 119 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 SLC22A23A1A5C7 686 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 RAB36O95755 333 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 TSPAN19P0C672 248 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 CD79AP11912 226 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 ZNF35P13682 527 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 CALCRP30988 508 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 GLRXP35754 106 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 DAP3P51398 398 aaKnown RBP12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 RPS23P62266 143 aaKnown RBP12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 TUBA1BP68363 451 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 TUBA4AP68366 448 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 VLDLRP98155 873 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 HGFACQ04756 655 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 KRTAP1-1Q07627 177 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 HIST3H3Q16695 136 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 HACD2Q6Y1H2 254 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 TUBA1AQ71U36 451 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 RNF113BQ8IZP6 322 aaKnown RBP12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 SLC22A24Q8N4F4 322 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 LRRC17Q8N6Y2 441 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 FNDC8Q8TC99 324 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 SGTBQ96EQ0 304 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 DOK1Q99704 481 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 MS4A5Q9H3V2 200 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 CMAHPQ9Y471 501 aa12.59□□□□□ -0.39
NIF3L1-205ENST00000409588 GMNCA6NCL1 334 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 DHHO43323 396 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 SERPINI2O75830 405 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 OR7A10O76100 309 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 HLA-HP01893 362 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 SERPINA5P05154 406 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 PGA4P0DJD7 388 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 PGA3P0DJD8 388 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 COX4I1P13073 169 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 ZNF14P17017 642 aaPredicted RBP12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 USF1P22415 310 aaPredicted RBP12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 THBS4P35443 961 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 ZNF84P51523 738 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 GALK2Q01415 458 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 NPRL3Q12980 569 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 PIN1Q13526 163 aaPredicted RBP12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 SLC36A2Q495M3 483 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 LRFN4Q6PJG9 635 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 DEF8Q6ZN54 512 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 TSPYL5Q86VY4 417 aaPredicted RBP12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 CDK20Q8IZL9 346 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 ZNF525Q8N782 197 aa12.58□□□□□ -0.4
NIF3L1-205ENST00000409588 CMTM5Q96DZ9 223 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms