RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ARL4DP49703 201 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 GZMKP49863 264 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 ALKBH1Q13686 389 aaKnown RBP12.09□□□□□ -0.47
CCDC3-202ENST00000378839 SIGIRRQ6IA17 410 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 STAC2Q6ZMT1 411 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 LRRTM1Q86UE6 522 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 OR6N2Q8NGY6 317 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 NKX3-1Q99801 234 aaPredicted RBP12.09□□□□□ -0.47
CCDC3-202ENST00000378839 FGF21Q9NSA1 209 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 OR5V1Q9UGF6 321 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 SLC6A5Q9Y345 797 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 AIPO00170 330 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 CDC40O60508 579 aaKnown RBP eCLIP12.08□□□□□ -0.48
CCDC3-202ENST00000378839 YES1P07947 543 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 KIR3DL2P43630 455 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 FAM205BPQ63HN1 556 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 LIX1LQ8IVB5 337 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 KDM8Q8N371 416 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 ZNF671Q8TAW3 534 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 SCMH1Q96GD3 660 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 RABL2AQ9UBK7 228 aaPredicted RBP12.08□□□□□ -0.48
CCDC3-202ENST00000378839 MOKQ9UQ07 419 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 CAMK2AQ9UQM7 478 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 A0A1B0GX78 115 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 OR4C45A6NMZ5 311 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 GMDSO60547 372 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 NUDT14O95848 222 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 TCRBP04435 133 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 HLA-DOBP13765 273 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 GLB1P16278 677 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 CSRP1P21291 193 aaKnown RBP12.08□□□□□ -0.48
CCDC3-202ENST00000378839 CXCR1P25024 350 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 STARD6P59095 220 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 GNG2P59768 71 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 INSM1Q01101 510 aaPredicted RBP12.08□□□□□ -0.48
CCDC3-202ENST00000378839 UBE2NLQ5JXB2 153 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 ASPHD2Q6ICH7 369 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 PLXDC1Q8IUK5 500 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 GPR119Q8TDV5 335 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 DUSP19Q8WTR2 217 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 FSCN3Q9NQT6 498 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 MRPL22Q9NWU5 206 aaKnown RBP12.08□□□□□ -0.48
CCDC3-202ENST00000378839 WDFY4Q6ZS81 3184 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 TRBV5-5A0A0J9YX44 114 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 TRABD2BA6NFA1 517 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 SUSD5O60279 629 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 CXCL3P19876 107 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 BTG1P62324 171 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 ACKR1Q16570 336 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 MEP1BQ16820 701 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 SLC35D2Q76EJ3 337 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 MDGA2Q7Z553 956 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.08□□□□□ -0.48
CCDC3-202ENST00000378839 BIVMQ86UB2 503 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 TOMM5Q8N4H5 51 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 ZNF519Q8TB69 540 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 THAP3Q8WTV1 239 aaPredicted RBP12.08□□□□□ -0.48
CCDC3-202ENST00000378839 DNASE2BQ8WZ79 361 aa12.08□□□□□ -0.48
CCDC3-202ENST00000378839 TRAV36DV7A0A075B6V5 113 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 A0A1W2PQD3 144 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 K7ESF4 209 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 BCAT2O15382 392 aaPredicted RBP12.07□□□□□ -0.48
CCDC3-202ENST00000378839 DUX1O43812 170 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 PTH2RP49190 550 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 TIGD3Q6B0B8 471 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 PWWP2BQ6NUJ5 590 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 OR2G2Q8NGZ5 317 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 OR8K3Q8NH51 312 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 OR5AK2Q8NH90 309 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 THEM6Q8WUY1 208 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 OIT3Q8WWZ8 545 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 AKAP1Q92667 903 aaKnown RBP eCLIP12.07□□□□□ -0.48
CCDC3-202ENST00000378839 SNAPC3Q92966 411 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 TBL1XR1Q9BZK7 514 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 C12orf10Q9HB07 376 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 LAMP5Q9UJQ1 280 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 TMED7-TICAM2A0A0A6YYA0 188 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 GSTZ1O43708 216 aaPredicted RBP12.07□□□□□ -0.48
CCDC3-202ENST00000378839 RAD1O60671 282 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 MPZL1O95297 269 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 PNPP00491 289 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 P2RX3P56373 397 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 EMC4Q5J8M3 183 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 IQCF2Q8IXL9 164 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 BEST4Q8NFU0 473 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 OR2T4Q8NH00 348 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 OR52I2Q8NH67 350 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 ZFAND1Q8TCF1 268 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 SMIM4Q8WVI0 70 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 CCDC74AQ96AQ1 378 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 KLK11Q9UBX7 282 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 IKZF2Q9UKS7 526 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 TMED7Q9Y3B3 224 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 V9GY05 133 aa12.07□□□□□ -0.48
CCDC3-202ENST00000378839 C7orf66A4D0T2 115 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 C1QBP02746 253 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 DCNP07585 359 aaKnown RBP12.06□□□□□ -0.48
CCDC3-202ENST00000378839 GDNFP39905 211 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 SLC6A8P48029 635 aa12.06□□□□□ -0.48
CCDC3-202ENST00000378839 FBXW4P57775 412 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms